Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0404 ATGAAATCGTTGGCCTCTCTTCCCATTGTCATTTGTCCAGTAGGGCGTGCGATCAAATTACAGAATGAAAGGGAATTACTAATAAGGGATAGATTCCTAGAATTTTATTCTGTTACTTTCTATTTTCCAAATTCGGCTGGCAAGGAAGTTGACCCTCAAACTCAATCTGAGACCCGGAAGAATTTCGAAATATTTGCATCGAAATTGGCCAGATTTAAGAAAAAGAACGCTGGCTTATCAAAAGAGATGGTATTAAAGAGAGGTCCATGGACTGAGGAAGGGGATTCTATTCTCGTCAACTACATCACCCTCCATGGCGAAGGACACTGGAACTCCGTAGCTCGCTGTGCAGGCACGCATTTCATCTATCTCTGTTTATACGTACGTAGTTTGGTTACCGGCAAAAGCTGCAGATTAAGATGGTCAAACTACCAGCGTCCAAGAATAGCAACCTCCATTCCCCATGGGGCAATCGCTATGAGATTCCGCGTCCGCAAAGGATTGGTTTCGAGGCAATGCGCATTACAAATTGATATGAGTTTGGGGTCCCAGACTCCTTCCCCAATATCCTATCTGTTCCTGAATTTATCGCAGAATATGGCTTCTGCCCACTACACTATCCGTTAG 627 0.4402 MKSLASLPIVICPVGRAIKLQNERELLIRDRFLEFYSVTFYFPNSAGKEVDPQTQSETRKNFEIFASKLARFKKKNAGLSKEMVLKRGPWTEEGDSILVNYITLHGEGHWNSVARCAGTHFIYLCLYVRSLVTGKSCRLRWSNYQRPRIATSIPHGAIAMRFRVRKGLVSRQCALQIDMSLGSQTPSPISYLFLNLSQNMASAHYTIR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0404 208 CDD SANT 89 144 IPR001005 -
Glsi11g0404 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 149 IPR017930 -
Glsi11g0404 208 SMART sant 86 147 IPR001005 -
Glsi11g0404 208 SUPERFAMILY Homeodomain-like 85 149 IPR009057 -
Glsi11g0404 208 Pfam Myb-like DNA-binding domain 87 144 IPR001005 -
Glsi11g0404 208 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 70 148 - -
Glsi11g0404 208 ProSiteProfiles Myb-like domain profile. 82 145 IPR001005 -
Glsi11g0404 208 Gene3D - 86 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0404 Glsi-ChrGlsi11 2692765 2694973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0404 75 149 MYB Transcription Factor Family AT3G06490 53.333 1.50e-19 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi11g0404 Myb_DNA-binding 2.6e-09 CL0123