Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0403 ATGGAAATTAAGGTCAAAGGTGGGTGTGAGACACAGCAGAGTGAAGAGGAGATGGGTATCCGAAAAGGTCCGTGGACGGTGGAAGAGGACACCATTCTCGTCAATTATATCGCCACTCACGGCGAAGGCCACTGGAATTCCGCAGCCCTCTGCGCAGGTCTCAAGAGAACTGGCAAAAGTTGCAGATTAAGATGGCTAAACTACTTGCGCCCCGATCTTCGGCGCGGAAATATCACACTGCAAGAACAGATATTGATTCTGGACCTCCATTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCGCAGCACTTGCCCGGAAGAACAGACAATGAGATAAAAAATTACTGGAGGACCAGAGTGATAAAACAGGCCAAGCAGCTCAAGTGTGAGGTTAATAGCAAACAGTTTAGAGATGCCATGCGCTACGTGTGGATGCCCCGCTTGCTGGAGCGCATTCGGGCAGCCGCATCCGAGTATCACCCAAGCTGCCAACCCACCACCTTCCCGGCTCAGAAACAGGTTCCCCCAACAGAGTGGGTCTCTGCCACTTCCTCGGACTCATCAACTGAGTTCCAGCTGCCTTTAAATTTGGACCACAGCATGTCTTCTGGATTACTGGGCCATCAAGTTTCCGACAGTGCAGGAAATGGGTCGGATTTGTGCCCGCCGGGCAATCCCTCGGGCGGTGGGGAGTGGGGCGAGGGTTTGTGGAACGACGAGAATATCTGGTTTTTGCAACAACAACTTTTTGAAAACCTATAA 762 0.5171 MEIKVKGGCETQQSEEEMGIRKGPWTVEEDTILVNYIATHGEGHWNSAALCAGLKRTGKSCRLRWLNYLRPDLRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCEVNSKQFRDAMRYVWMPRLLERIRAAASEYHPSCQPTTFPAQKQVPPTEWVSATSSDSSTEFQLPLNLDHSMSSGLLGHQVSDSAGNGSDLCPPGNPSGGGEWGEGLWNDENIWFLQQQLFENL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0403 253 MobiDBLite consensus disorder prediction 206 232 - -
Glsi11g0403 253 Gene3D - 20 75 - -
Glsi11g0403 253 MobiDBLite consensus disorder prediction 206 220 - -
Glsi11g0403 253 CDD SANT 24 69 IPR001005 -
Glsi11g0403 253 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Glsi11g0403 253 Gene3D - 79 120 - -
Glsi11g0403 253 SMART sant 74 122 IPR001005 -
Glsi11g0403 253 SMART sant 21 71 IPR001005 -
Glsi11g0403 253 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Glsi11g0403 253 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Glsi11g0403 253 SUPERFAMILY Homeodomain-like 18 116 IPR009057 -
Glsi11g0403 253 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 186 IPR044676 GO:0003700|GO:0006355|GO:0043565
Glsi11g0403 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Glsi11g0403 253 FunFam MYB transcription factor 79 142 - -
Glsi11g0403 253 FunFam Myb transcription factor 22 74 - -
Glsi11g0403 253 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Glsi11g0403 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Glsi11g0403 253 CDD SANT 79 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0403 Glsi-ChrGlsi11 2685110 2686066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0403 15 249 MYB Transcription Factor Family AT2G47190 52.256 2.69e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g0403 Myb_DNA-binding 9.4e-14 CL0123