Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0394 ATGGTGGCCGATGCAGACCTTGTGTGTCAACAGAGCGTTCCTGGGTTGGATGTACAATATTTTCCTAAAGGAACCACTATTCATGAGATCGAAGATGCAGCTACCATCACGCCTCCGAGTTTTGACGGATTTCGTGCTTCTGAACTGGTCTCTGCCGAGTTTCTCAGTTCACAAGAAGATGTTAGACATGCAGACAGAAAATCAGATGCTGCTCTTGATTCTGCTGTTATTCAATTTGTTCCTAGCATCCGTTCTGGCAGTTTTGCTGACATTGGGCCCCGTAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCTTCTCACATGGGATCACTATATACGTTTCCTAAACCAAGTGCCTTTTATGGGGTATTTGATGGTCATGGTGGACCTGAAGCTGCAGCTTATATCCGGAAAAATGTAATGAGACTCTTTTTTGAAGATGTCAGCTTCCCCCAGACATCTGAAGTTGATAATGTTTTTTCACAAGAGGCAGAGAACTCCCTAAGGAAAGCATTTCTTTTGGCCGACTTAGCTTTGGCTGATGATTGCAGTGTGAGCAGCTCATCAGGGACTACGGCGCTTACTGCCTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGTGATTGCCGAGCAGTTCTCTGCCGTAAAGGAGAGGCAATTGATATGTCTCAAGACCACAGGCCTATTTATCCATCAGAACGGAGGCGAGTTGAAGAACTGGGGGGCTACATAGATGATGGTTATCTTAATGGGGTTTTGTCAGTTTCTCGAGCCCTAGGGGACTGGGATATGAAGTTTCCTCGCGGTTCTCCCTCACCTTTGATTGCAGAGCCTGAGTTTCGTCAAGTGGTTCTAACAGAGGATGATGAATTCCTCATCATAGGATGTGATGGGATTTGGGAAAAGATGACAAGTCAGCATGCTGTGAGCCTTGTTCGTAGAGGCCTGAGGCGGCATGATGACCCAGAGCGATGTGCCAGGGACCTGGTAATGGAGGCTTTACGCCTGAACACGTTCGACAATTTTACGGTGATTGTTGTGTGCTTCTCTTCTGTTGATCAGAGTGAGCCATCCCCACCCCGCCAAAGGAAATTGAGGTGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCAAGCAACTGA 1182 0.4687 MVADADLVCQQSVPGLDVQYFPKGTTIHEIEDAATITPPSFDGFRASELVSAEFLSSQEDVRHADRKSDAALDSAVIQFVPSIRSGSFADIGPRRYMEDEHIRIDDLSSHMGSLYTFPKPSAFYGVFDGHGGPEAAAYIRKNVMRLFFEDVSFPQTSEVDNVFSQEAENSLRKAFLLADLALADDCSVSSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPSERRRVEELGGYIDDGYLNGVLSVSRALGDWDMKFPRGSPSPLIAEPEFRQVVLTEDDEFLIIGCDGIWEKMTSQHAVSLVRRGLRRHDDPERCARDLVMEALRLNTFDNFTVIVVCFSSVDQSEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0394 393 Gene3D - 70 361 IPR036457 -
Glsi11g0394 393 PANTHER PROTEIN PHOSPHATASE 2C 76 352 IPR015655 GO:0004722|GO:0006470
Glsi11g0394 393 SMART PP2C_SIG_2 99 354 IPR001932 -
Glsi11g0394 393 SUPERFAMILY PP2C-like 78 356 IPR036457 -
Glsi11g0394 393 SMART PP2C_4 74 352 IPR001932 -
Glsi11g0394 393 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Glsi11g0394 393 Pfam Protein phosphatase 2C 94 346 IPR001932 -
Glsi11g0394 393 ProSiteProfiles PPM-type phosphatase domain profile. 84 354 IPR001932 -
Glsi11g0394 393 FunFam Probable protein phosphatase 2C 22 67 357 - -
Glsi11g0394 393 CDD PP2Cc 83 354 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0394 Glsi-ChrGlsi11 2616190 2618402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0394 97 389 PP2C-type Phosphatase Gene Family AT3G62260 71.525 3.68e-155 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Glsi11g0394 PP2C 6.4e-64 CL0238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0394 11 2616190 2618402 Glsi11g0394 11 2616190 2618402 ECH