Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0381 ATGGAATCTAGATTTGGGGCTGAAGCCTTTCAGTATTATGGTATGGGTTCTTCGGATTTGCGAACCGTGGGGAAGAGGTCCTTGGAGTGGAATTTGAATGATTGGAAATGGGATGGTGACCTTTTCTTAGCTAGCCCGCTGAATCCAGTGCCAACCGATGGGGCAGGCCAACAATTTTTCCCTCTTCAGTCGGGGGTCCCTATTGTTGGGTCCTCCAACAGTTCATCGTCCTGTTCTGAAGAAGTAGATCTTGATATTGGCAAGGGGAAGAAAGAAGGAGAGAAAAAAAGGAGGGCTATTGTGGTGGAGGATGACAGCTTGAATGAAGAAGCAGGTGGCCTAAGCTTAAAGGTTGGTGTACATAGTTCTCCAATTGCAGATAGGGAGATCGCAAGTTGGGAAGGAATGAAAGGGAAGAAAACCAGAGTATCTGGAGGTACGTCGAATCGAGCTGTTTGTCAGGTGAAGGACTGCAGGGCAGATCTGAGCCATGCTAAGGATTATCACCGGCGTCATAAAGTTTGTGAGATGCACTCAAAGGCCAGTAGGGCACTCGTGGGAAATGTAATGCAGCGGTTCTGTCAACAATGTAGTAGGTTTCACATGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCTGGCCATAACAAAAGAAGGAGGAAAACAGACCATGATGCTGTTCCTAATGGAAGTTCACTAAATGACGATCAGACTAGTAGTTATCTGTTGATTAGTTTATTGAAGATACTTTCAAATATGCATTCTAACAGGTCTGATCAGGCTGCAGATCAAGATCTGCTATCTCATCTTCTAAGGAGCCTTGCTAGTCAAAATGGTGAACCAGGGAGCAAGAACTTGGCTAATCTTTTGCAGGAACCGGAGAATTTGTTGAAAGAGGGGAGTTTTTCTGGGAAGTCAGAGATGGTTTCTACTTTATTCTCAAATGGTTCTCTAGGCTCGCCAACTGCTATAAGACAACAGCAAACATTATCTATAACTGAAATGCAACATCAAGTGATGCAAGCACATGATGCTGGGGCTGCTGAGCAACAAACTATGTCCTCTACAATACCTAGCATTTCAAACTGTCCTCCATCTTATGCAGAAGTTAGGGACAGTACTGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGATTCAGGTGATGGCATGGAAGATATAGAAAGATTGCCTGTCTCTGCAAATCTTGGTATTAACTCTCTTGATTACCCATGGACCCAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCAGCCCAGTCCCCTTCGAGTTCTAGTGGAGAAGCTCAGAGCCGCACAGATCGGATTGTTTTTAAACTCTTTGGTAAAGAACCAAATGATTTTCCTCTTGTACTTAAAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGACATTGAGAGCTACATTCGGCCGGGTTGTATCATTTTGACCATTTATCTGCGTCAAGCTGAGGCTGTGTGGGACGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTTCTGGATGTCTCAGATGATGCTTTTTGGAGGACTGGATGGGTTCACATTAGGGTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAGGTTGTCATAAATACATCCCTGCCTTTCAGAAGAAGTAACAATTATAGTAAGATATTGAGTGTCAGTCCTATTGCTGTACCAGCATTAGAGAGAGCTCGATTTTCAGTCAAGGGTGTTAACCTAATTCGTCCTGCGACTAGGTTATTGTGTGCTCTAGAAGGAAAATATCTGGTCTGTGAAGATGCTCATGCATCAATGGATCAGTGCTCTAAGGAGCTTGATGAGCTTCAGTGTGTACAGATTTCATGTTCTGTTCCTGTGATGCATGGAAGAGGATTTATTGAGGTTGAGGACCAGGGTTTGAGCAGCAGCTTTTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGCTCAGAAATCTGTAAGCTTGAGCCTCTACTTGAATCAAGTGTAATTGATTCAGATAATGAAGGAGCTGGAAATTTGAGATCCCAAAGTGAAGCAATGGATTTCATTCATGAAATTGGTTGGCTTCTCCACAGAAGTCAATTGAAGTCAAGGCTGGGTCACTTAAACTCTAGTGGAGAGGTTTTTCCATTAAAACGGTTTAAGTGGCTCATGGAGTTCTCTATGGACCATGATTGGTGTGCAGTAGTGAAGAAACTATTGAACCTACTGCTTGATGGAACTGTGGATACAGGAGATCACCCTTCCCTGTATCTTGCACTTTCAGATATGGGTCTTCTTCATCGAGCTGTAAGGAGAAATAGCAGGCAGTTGGTGGAGCTGCTTTTGAGATATGCTCCTGAGAAGACGTCTATTAAACTACGACCTGAAGACAAGGCACTGGTTGATGGAGGGAATTTGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCAGGTTTGACACCACTCCACATAGCTGCTGGGAAAGATGGTTCTGAGGATGTACTAGATGCTTTAACTAATGATCCTTACATGGTGGGAATTGAAGCATGGAAGAGTTCCTGTGACAGCACGGGCTCCACGCCTGAAGATTATGCACGCTTGCGTGGCCATTATACATACATTCATCTGGTGCAGAGGAAAATTAACAAGAGACGAGCAGCAGCTCATGTTGTGGTTGAAATTCCCAGCAATCCGACCAACTGTAGTGGAAACCAGAAGCAAAATGGGTCGTCCACTATCTTTGAGATTGGAAAGTCTGAAGAAAGACGTATCCAAGGTCACTGCAAACTTTGTGATCATAAATTGTCCTGTAGAGCTGCAGTTGGCAGGTCTTTGGTGTACAAACCTGCAATGCTCTCAATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGCTCACCGGAAGTCCTGTATGTGTTCCGACCCTTCAGGTGGGAATCTTTGGATTTTGGAACAAGCTAA 3036 0.4377 MESRFGAEAFQYYGMGSSDLRTVGKRSLEWNLNDWKWDGDLFLASPLNPVPTDGAGQQFFPLQSGVPIVGSSNSSSSCSEEVDLDIGKGKKEGEKKRRAIVVEDDSLNEEAGGLSLKVGVHSSPIADREIASWEGMKGKKTRVSGGTSNRAVCQVKDCRADLSHAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTDHDAVPNGSSLNDDQTSSYLLISLLKILSNMHSNRSDQAADQDLLSHLLRSLASQNGEPGSKNLANLLQEPENLLKEGSFSGKSEMVSTLFSNGSLGSPTAIRQQQTLSITEMQHQVMQAHDAGAAEQQTMSSTIPSISNCPPSYAEVRDSTAGQIKMNNFDLNDIYIDSGDGMEDIERLPVSANLGINSLDYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLKAQILDWLSHSPTDIESYIRPGCIILTIYLRQAEAVWDELCYDLTSSLNRLLDVSDDAFWRTGWVHIRVQHQIAFIFNGQVVINTSLPFRRSNNYSKILSVSPIAVPALERARFSVKGVNLIRPATRLLCALEGKYLVCEDAHASMDQCSKELDELQCVQISCSVPVMHGRGFIEVEDQGLSSSFFPFIVAEEDVCSEICKLEPLLESSVIDSDNEGAGNLRSQSEAMDFIHEIGWLLHRSQLKSRLGHLNSSGEVFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLDGTVDTGDHPSLYLALSDMGLLHRAVRRNSRQLVELLLRYAPEKTSIKLRPEDKALVDGGNLSFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPYMVGIEAWKSSCDSTGSTPEDYARLRGHYTYIHLVQRKINKRRAAAHVVVEIPSNPTNCSGNQKQNGSSTIFEIGKSEERRIQGHCKLCDHKLSCRAAVGRSLVYKPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWESLDFGTS 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0381 1011 Pfam SBP domain 153 226 IPR004333 GO:0003677
Glsi11g0381 1011 Gene3D - 143 214 IPR036893 GO:0003677|GO:0005634
Glsi11g0381 1011 SUPERFAMILY SBT domain 151 231 IPR036893 GO:0003677|GO:0005634
Glsi11g0381 1011 SUPERFAMILY Ankyrin repeat 781 896 IPR036770 -
Glsi11g0381 1011 MobiDBLite consensus disorder prediction 350 373 - -
Glsi11g0381 1011 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Glsi11g0381 1011 Gene3D - 714 902 IPR036770 -
Glsi11g0381 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 87 899 IPR044817 GO:0003677
Glsi11g0381 1011 MobiDBLite consensus disorder prediction 217 238 - -
Glsi11g0381 1011 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Glsi11g0381 1011 MobiDBLite consensus disorder prediction 420 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0381 Glsi-ChrGlsi11 2451054 2458622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0381 24 1011 SBP-box Gene Family AT3G60030 54.717 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi11g0381 SBP 1.9e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0381 11 2451054 2458622 Glsi11g0381 11 2451054 2458622 ECH