Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0380 ATGGAATTCGACTTAATCAGCCTCACTTCTTCCCCAAGAGTCCAGAAACAGTACACCCACGCAGCCACGATTCCAATTAAGGACAACCCACATAGCCAAGAAGGACCAATTGACCAACTCTTCCAAGGTCAACTACAGAAACCAAGATTTGTTGACCCTCCAAATCCCGTGTTCCTACTTCCTATTCTGTTCTCTTCTCCGAATGGTCGTATATTGACATTTGATTTCAGAATCATGAGTTGTTTCAGCTGTTGCGAAGAGGATGACCTCCACAAAACTGCAGAGACTGGAGGACCATACATGGTAAAAAACTCAGCAGGAAATGATGGAAATTATCGTGCTTCAGAATCTGCAAAGCAGGGTTCTCAGGCTGTTAAAATCCAGCCCATTGAAGTTCCTGCTATACCAGTTGATGAACTAAAAGAAGTTACAGATGATTTTGGGACAAATTCTCTGATTGGGGAGGGTTCCTATGGAAGAGTATATTATGGCCTTCTTAAGGGTGGGCAGGTTGCAGCAATCAAGAAGTTAGATGCTAGTAAACAACCTGATGAGGAATTTCTAGCCCAGGTTTCCATGGTATCAAGGTTGAAGCATGGAAATTTTGTTCAGTTGCTTGGATATTGTGTTGATGGAACTTCCCGTGTTCTTGCTTACGAGTTTGCATCTAATGGGTCTCTTCACGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTGTCATGGGCACAGAGAGTAAAAATTGCTGTAGGGGCTGCAAAAGGGCTTGAGTACTTGCATGAGAAGGCTGATCCTCACATTATCCACCGAGACATCAAGTCAAGCAATGTACTAATATTTGATGATGATGTGGCTAAAATTGCAGATTTTGATTTGTCCAATCAGGCTCCTGACATGGCTGCACGTCTTCATTCTACCCGTGTCCTTGGAACCTTTGGTTACCATGCACCAGAATACGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATATAGCTTTGGTGTTGTCCTTCTGGAACTTCTGACTGGAAGGAAGCCTGTTGATCATACACTACCGCGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAAACTCAGCGAGGATAAAGTCAGGCAGTGCGTTGATACAAGACTAGGAGGAGATTACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCACTATGCGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGAATGCACGACCTGGACCTGCTGGCGAAACACCAAATTAA 1320 0.4409 MEFDLISLTSSPRVQKQYTHAATIPIKDNPHSQEGPIDQLFQGQLQKPRFVDPPNPVFLLPILFSSPNGRILTFDFRIMSCFSCCEEDDLHKTAETGGPYMVKNSAGNDGNYRASESAKQGSQAVKIQPIEVPAIPVDELKEVTDDFGTNSLIGEGSYGRVYYGLLKGGQVAAIKKLDASKQPDEEFLAQVSMVSRLKHGNFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGPAGETPN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0380 439 FunFam pto-interacting protein 1 223 434 - -
Glsi11g0380 439 Gene3D Transferase(Phosphotransferase) domain 1 222 431 - -
Glsi11g0380 439 ProSiteProfiles Protein kinase domain profile. 147 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0380 439 CDD STKc_IRAK 153 426 - -
Glsi11g0380 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Glsi11g0380 439 SMART serkin_6 147 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0380 439 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524
Glsi11g0380 439 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 82 431 - -
Glsi11g0380 439 SUPERFAMILY Protein kinase-like (PK-like) 126 423 IPR011009 -
Glsi11g0380 439 Gene3D Phosphorylase Kinase; domain 1 108 221 - -
Glsi11g0380 439 Pfam Protein tyrosine and serine/threonine kinase 151 423 IPR001245 GO:0004672|GO:0006468
Glsi11g0380 439 FunFam PTI1-like tyrosine-protein kinase 3 111 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0380 Glsi-ChrGlsi11 2441814 2450956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0380 138 424 Receptor kinase-like Gene Family AT4G02010 50.515 1.36e-88 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Glsi11g0380 PK_Tyr_Ser-Thr 5.1e-45 CL0016