Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0379 ATGAACGGAAAGGTACTTGTTTCTGCCGTTTCCCTCATCCTTGTGGTGGGGGTAGCCATCGGCACTATTGTCGTGGTTCACAAGAAGAATGGTGAGCCTGAAGTAGTTGAACATCAGAAGGCGGTGAAGACAATGTGCCAGAACACAGAGGACCAAAAACTTTGCCACGACACTCTGAGCTCTGTGAAGGATGCAGACCCAAAGGCATACTTAGGGGCGGCGGTGGAAGCAACGACCAACAGCGTGATAAAGGCGTTAAATATGAGTGATAGGCTGGCAGTGGAGCGCGGGAGTAATAGCGCGGGCATTAAGATGGCTCTTGATGACTGCAAGGACTTGTTGCAATCTGCATTGGACAGTCTGGAAGCATCGGCTAATTTGTTAAAAAGCAACAACATCCAAGGCATCAGTGACCAATCCCCTGACTTCAGGAATTGGTTGAGCTCTGTTATCTCATACCAACAGTCTTGCATGGACGGTTTTGACGATAACAAAGACGGCGAGAAAGAGATCAAAGAAATACTGCAAAGCCAGGGTAATCTGGACGAAATGGGAAAGCTCACCGGCATAGCCCTCGACATCGCAGCCGATCTGTCAAAGATCCTTGAGCAGTTTGGGCTGAAGTTGGACGTGAAGCCTGCCTCCCGTCGTCTTCTGGAGGTGGACAGCGAAGGGTTCCCTAGCTGGTTCTCTGCTTCCGATCGCAAGCTGTTGCAGAAGGCCAGAAGGAGGGGAGGACACATCAAACCCAACGTGGTTGTGGCCAAGGATGGCAGCGGCAATTTTAAGACTATTAAGGAAGCCATTGACTCCTATCCTAAGGGCTACAAGGGTAGATACGTCATCCACGTAAAGGCCGGTGTATATGCCGAGTACATCATCGTTCCGAAAACAGCAGTCAATTTGCTTATGTACGGTGATGGCCCTACCAGAACCATTGTCACTGGTAACAAGAACTTTGTTGACGGTGTCAAGACAATGCAAACGGCCACCTTCGCCAATCTCGCCCCTGGGTTCATCGCCAAGTACATGGGATTCGAGAACAGCGCAGGTCCTGAAAAGCACCAAGCCGTGGCACTCAGAAACCAGGGAGATCAATCAGCTTTCTTCGATTGTAATATACACGGTTACCAAGACAGCCTGTATGTCCAAACCAATCGTCAATTCTATCGCAACTGTGAAATCTCTGGCACCGTCGACTTCATCTTCGGAGTGTCCACTACCTTGATTCAGAACTCTAAGATCGTAGTGAGGAAGCCGTTGGCTAAACAATTCAACACAGTCACAGCAGACGGCAGAAGCCAAAAGAATATGCCTACTGGGATTGTCCTCCAGAACTGTCAGATCGTTCCCGAGTTGGCTCTCTTCCCTGAAAGATTTGCAATCAAGACCTACTTGGGCAGACCATGGAAGGCATTCTCCATGACTGTCGTTATGGAATCCACTCTGGGTGACTTTATTCAACCAGAAGGCTGGATTCCTTGGGAAGGTAATATGTACCTGGACACCTTGTACTACGCCGAGTTCGCTAACTCTGGCCCAGGTGCTGATGTTTCTAAAAGAATCAATTGGAAGGGTTACCATGGCCTCCTTAGCAAGAATGAAGCTGCCCAGTTCACCGTTGGCCAATTCCTCAAAGGTGGAACCACCTCCCGATCTGAGGATTGGATGAAGCCCCTTCATGTTCCTTTTGACATCGGCTTCGTCCGACCTTGA 1716 0.4942 MNGKVLVSAVSLILVVGVAIGTIVVVHKKNGEPEVVEHQKAVKTMCQNTEDQKLCHDTLSSVKDADPKAYLGAAVEATTNSVIKALNMSDRLAVERGSNSAGIKMALDDCKDLLQSALDSLEASANLLKSNNIQGISDQSPDFRNWLSSVISYQQSCMDGFDDNKDGEKEIKEILQSQGNLDEMGKLTGIALDIAADLSKILEQFGLKLDVKPASRRLLEVDSEGFPSWFSASDRKLLQKARRRGGHIKPNVVVAKDGSGNFKTIKEAIDSYPKGYKGRYVIHVKAGVYAEYIIVPKTAVNLLMYGDGPTRTIVTGNKNFVDGVKTMQTATFANLAPGFIAKYMGFENSAGPEKHQAVALRNQGDQSAFFDCNIHGYQDSLYVQTNRQFYRNCEISGTVDFIFGVSTTLIQNSKIVVRKPLAKQFNTVTADGRSQKNMPTGIVLQNCQIVPELALFPERFAIKTYLGRPWKAFSMTVVMESTLGDFIQPEGWIPWEGNMYLDTLYYAEFANSGPGADVSKRINWKGYHGLLSKNEAAQFTVGQFLKGGTTSRSEDWMKPLHVPFDIGFVRP 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0379 571 Pfam Pectinesterase 251 547 IPR000070 GO:0030599|GO:0042545
Glsi11g0379 571 SUPERFAMILY Pectin lyase-like 248 563 IPR011050 -
Glsi11g0379 571 SMART PMEI_2 37 194 IPR006501 GO:0004857
Glsi11g0379 571 FunFam Pectinesterase 38 199 - -
Glsi11g0379 571 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Glsi11g0379 571 PANTHER PECTINESTERASE 18 558 - -
Glsi11g0379 571 CDD PMEI-like_3 44 200 - -
Glsi11g0379 571 Coils Coil 111 131 - -
Glsi11g0379 571 Gene3D - 245 568 IPR012334 -
Glsi11g0379 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 199 IPR035513 -
Glsi11g0379 571 NCBIfam pectinesterase inhibitor domain 26 170 IPR006501 GO:0004857
Glsi11g0379 571 FunFam Pectinesterase 246 568 - -
Glsi11g0379 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 195 IPR035513 -
Glsi11g0379 571 Pfam Plant invertase/pectin methylesterase inhibitor 41 194 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0379 Glsi-ChrGlsi11 2438101 2439921 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0379 1 568 Carbohydrate Esterase AT2G47030 39.339 5.63e-141 419