Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0377 ATGAACGGAAAGGTACTTGTCTCCGCTGTTTCTCTGATCCTGGTGGTGGGTGTGGCCCTGGGTGTCGTCGCCGTCGTCCACTTCAACAAGAATGACACTGATGTCAGCGGCGGCGACTTGAGCACCCACAATAAGGCTGTCACGGCTATATGCCAAGGCTCCGACGACAACAAGCTTTGCCAGGACACCCTGGGTCCCGTCGATACCAAAGACCCTAAGGATTACATCAAGGCTGTGGTTCAAACCTCCATGGAAAGCGTCATCAAGGCCTTCAATTTGACGGACAGGCTGTCCGTTGAACACGGGAAGAGCCCCCCCGGCATTAAGATGGCCATTGAGGATTGCAAGGACTTGCTGCAAGATGCCATGGACGAACTTCAGGCCTCCGGCATCATGGTTCGCGACAACAACGTTCGCAGCGTCAACGAGCGTACTGCTGATCTCAAGAACTGGCTGGGGGCTGTGATTGCCTACCAACAATCTTGCCTGGATGGGTTTGCCACGGACGTTGATGGTGAGAAGCAAGTTCAGTCTCAGTTGCAATCAGGTGGCCTCGACAAAGTGGGGAAGCTCACTGGGTTGGCACTTGATGTTGTGACTGGGATTTCCCAATTGCTTTCCGCATTTGACCTGAACTTGAACGTGAAACCTGCTTCTCGTCGCCTTCTTGAGGTGGATGTGGATCACGAAGGGTATCCCTCTTGGTTCTCCGGCTCTGATCGCAAGCTCTTGACTGCTATCAACAAAGGAGTTCACCCTACGCCCAACGCAGTGGTAGCCAAGGATGGCAGTGGCCAATTTAAGACGGTTCTAGATGCTATCAACTCGTACCCCAAGAACTTCGCAGGCACATTTGTTATTTACGTGAAGGCTGGTGTTTACAACGAGTACATCGCCATCAACAAGAAAAAGAGCAATATCTTGATGTACGGTGATGGTCCTACAAAAACCATTATCACTGGTAGCAAGAACTTCCGCGACGGAGTGAAGACAATGCAAACTGCCACCTTCTCCACTACCGCTGAAGGATTCGTTGCCAAGTCAATTGCATTCGAGAACACCGCTGGAGCCGGAGGACATCAAGCAGTTGCACTCCGCGTGCAAGGGGATCGTTCGGCTTTCTTCGATTGTGCCATTCGTGGTTACCAAGACAGCTTGTACGTGCATGCTAAACGTCAATTCTACCGCAACTGTGAGATCTCTGGCACAGTGGACTTCATATTTGGCTACTCCACCACCTTGATCCAAAACTCCAAGATCATTGTGAGGAAGCCTAATCCCAATCAGCAGAACATAGTGGTGGCAGACGGCACAGCCCAGAAGAACATGCCCACCGGAATTGTTCTTCACAACTGTCAGATCGTGCCAGACCGGGACCTCGTCAACGACAGGATCACCGTGAGGACGTATTTGGCAAGGCCATGGAAGGCATTCTCAAAGGCAATCTTCATTGAGAATGAAATTGGTGACTTGATCCAGCCAGACGGTTATCTTCCTTGGATGGGATCACTCTATCTAGACACCTGCTACTTCGCAGAGTACGGAAACTCTGGGCTTGGAGCTGCTGTGGATAAAAGGGTCCGGTGGGGTCGTGGGCTTCTTTCCAAGGATGAAGCTGCTCGTTACACTGCTGAACAATGGCTTCATGCTAGCACATGGTTGCCGGCCAGCGGTATTCCTTTCGACCTTGGCCTTACCAGAACTTGA 1707 0.5149 MNGKVLVSAVSLILVVGVALGVVAVVHFNKNDTDVSGGDLSTHNKAVTAICQGSDDNKLCQDTLGPVDTKDPKDYIKAVVQTSMESVIKAFNLTDRLSVEHGKSPPGIKMAIEDCKDLLQDAMDELQASGIMVRDNNVRSVNERTADLKNWLGAVIAYQQSCLDGFATDVDGEKQVQSQLQSGGLDKVGKLTGLALDVVTGISQLLSAFDLNLNVKPASRRLLEVDVDHEGYPSWFSGSDRKLLTAINKGVHPTPNAVVAKDGSGQFKTVLDAINSYPKNFAGTFVIYVKAGVYNEYIAINKKKSNILMYGDGPTKTIITGSKNFRDGVKTMQTATFSTTAEGFVAKSIAFENTAGAGGHQAVALRVQGDRSAFFDCAIRGYQDSLYVHAKRQFYRNCEISGTVDFIFGYSTTLIQNSKIIVRKPNPNQQNIVVADGTAQKNMPTGIVLHNCQIVPDRDLVNDRITVRTYLARPWKAFSKAIFIENEIGDLIQPDGYLPWMGSLYLDTCYFAEYGNSGLGAAVDKRVRWGRGLLSKDEAARYTAEQWLHASTWLPASGIPFDLGLTRT 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0377 568 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Glsi11g0377 568 PANTHER PECTINESTERASE 18 555 - -
Glsi11g0377 568 Pfam Plant invertase/pectin methylesterase inhibitor 46 196 IPR006501 GO:0004857
Glsi11g0377 568 CDD PMEI-like_3 49 203 - -
Glsi11g0377 568 SMART PMEI_2 42 198 IPR006501 GO:0004857
Glsi11g0377 568 FunFam Pectinesterase 251 565 - -
Glsi11g0377 568 NCBIfam pectinesterase inhibitor domain 38 170 IPR006501 GO:0004857
Glsi11g0377 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 199 IPR035513 -
Glsi11g0377 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 203 IPR035513 -
Glsi11g0377 568 Pfam Pectinesterase 256 550 IPR000070 GO:0030599|GO:0042545
Glsi11g0377 568 SUPERFAMILY Pectin lyase-like 252 564 IPR011050 -
Glsi11g0377 568 Gene3D - 251 565 IPR012334 -
Glsi11g0377 568 FunFam Pectinesterase 43 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0377 Glsi-ChrGlsi11 2425735 2427522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0377 3 565 Carbohydrate Esterase AT3G62170 40.978 1.35e-144 428