Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0368 ATGGCCAAAGTCTCTAGTTCTTCCTCAGAATCTGTCAGCAGCGGCAGCAACCGCCCAGATTTCTCTACCGTATCCTCTCTCAAACAATTGAAGAAAGACCTTCCCACAGATCTCAGGCTTGGACCAAGCAGTTCAGCCACTCAGCATGTTGACTCTTCCATTTCAAGCGATCCTGCCAACTTCTTTGTCAAGGTCCACATGGAAGGCATTCCAATTGGCAGAAAACTCGATCTATTAGCTCATGCTGGCTACCATGAATTAGTAAAGACACTTGAAGACATGTTTCACACTACAATTCTCTTGGGGACTGAGATGGACGGAGTGCAACCTGAGAGATGCCATGTGCTAACCTATGAAGATGAAGAAGGGGACTTGGTCGTGGTTGGGGATGTTCCTTGGGAGATGTTCTTATCCAGTGTAAAGAGATTGAAGATCACCAGGGTAGACACATTCGGGGGTTGA 462 0.4697 MAKVSSSSSESVSSGSNRPDFSTVSSLKQLKKDLPTDLRLGPSSSATQHVDSSISSDPANFFVKVHMEGIPIGRKLDLLAHAGYHELVKTLEDMFHTTILLGTEMDGVQPERCHVLTYEDEEGDLVVVGDVPWEMFLSSVKRLKITRVDTFGG 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0368 153 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 51 148 IPR003311 GO:0005634|GO:0006355
Glsi11g0368 153 Pfam AUX/IAA family 55 147 IPR033389 -
Glsi11g0368 153 ProSiteProfiles PB1 domain profile. 60 150 IPR000270 GO:0005515
Glsi11g0368 153 MobiDBLite consensus disorder prediction 40 55 - -
Glsi11g0368 153 MobiDBLite consensus disorder prediction 1 55 - -
Glsi11g0368 153 SUPERFAMILY CAD & PB1 domains 56 145 - -
Glsi11g0368 153 Gene3D - 55 152 - -
Glsi11g0368 153 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0368 Glsi-ChrGlsi11 2350992 2351850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0368 42 145 B3 DNA Binding Superfamily AT4G23980 36.538 3.59e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi11g0368 AUX_IAA 2.4e-29 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3511 02 82154939 82157809 Glsi11g0368 11 2350992 2351850 CCT
Glsi11g0368 11 2350992 2351850 Glsi11g0368 11 2350992 2351850 ECH