Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0362 ATGGGCAGGCACTCTTGCTGTTACAAGCAAAAGCTTCGGAAGGGCCTATGGTCGCCTGAGGAGGATGAAAAACTTTTGAGACATATTACCAAGTACGGCCATGGCTGTTGGAGCTCTGTTCCTAAGCAAGCAGGTCTACAGAGATGCGGTAAGAGCTGTAGGCTTAGGTGGATCAACTACCTAAGGCCTGATTTGAAGAGAGGTACATTCTCGCAAGAAGAAGAAAATCTCATCATTGAACTTCATGCGGTGTTAGGGAATAGATGGTCTCAAATTGCGGCACAATTGCCGGGGAGAACTGACAATGAAATAAAGAACCTGTGGAATTCTTGCCTAAAGAAGAAACTGAAGCAAAGAGGTATAGACCCTGTGACCCATAAACCACTCTCTGAGTTTGAAAATGGAGATGACAATAAAGACGCAGCAGCCAGGAGCAGAGAGAAAGTACCGGCTGTATCCAGTGAATTGAAACTCCTGAAATCAGAAAGTCCCAAGTCAGATGCAGCTTCCTATGAGCACACACCATCTTCAATTGCCGCAAAAGCTAATATGGAAGCTTCTTCCAGCTTCAAGTTTGAGAGCAACACAAGTAACAGCGATTTGATAACCAATTGTTGCAGCAAAGAATTCTTCCCAGACAGGTTTATAACGAGCCACCAGGAAAGCTTCCAACCCTCAGATTTGATGGGGAATTTCCCACTTCAGACCTTCTCAACTAATTCAAACCTTTGTCATTGGTTCAGCCAAACAGCAAGACCATTTGATGTCAACTCTGAATTTGCTTCCAACGCCATATCTACTGTTCTTCCTACTTCTAGTTGCTACAGGCCAACGGTTGCCGTTCGCTCCGCAGATATTTCTATGGCCTCTTTCACTGCGAATGGATCCCAATCCCATTATTGGGAAGCCGAAGCCTCCAACAGAAGTAATAACAGCAGCACAGAGGTGAGAAGTAACAGCCCCTTAAACCTACAGAACAGTATGGTTTCTTGGGGATTGACAAATTGTAGTGCCACAGCAAAAGAGAGCCAAATTCATGAGATGGAAAGCAAGACAGAGGAAGGTAAGTGGGACGAGTACGTTCAAAATCCAATCTTAATGCTGGCTGCTGTACAATATCAAACTCCTGAACCTATATGCAATGAGATAAAGCCGATCACGCATTTGGTATCAGATACGTTAGCGGCCATATTGCCTCATAACAAGCAGCAATAA 1215 0.4444 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLKQRGIDPVTHKPLSEFENGDDNKDAAARSREKVPAVSSELKLLKSESPKSDAASYEHTPSSIAAKANMEASSSFKFESNTSNSDLITNCCSKEFFPDRFITSHQESFQPSDLMGNFPLQTFSTNSNLCHWFSQTARPFDVNSEFASNAISTVLPTSSCYRPTVAVRSADISMASFTANGSQSHYWEAEASNRSNNSSTEVRSNSPLNLQNSMVSWGLTNCSATAKESQIHEMESKTEEGKWDEYVQNPILMLAAVQYQTPEPICNEIKPITHLVSDTLAAILPHNKQQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0362 404 PANTHER MYB DOMAIN PROTEIN 55 1 335 - -
Glsi11g0362 404 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Glsi11g0362 404 MobiDBLite consensus disorder prediction 125 153 - -
Glsi11g0362 404 FunFam MYB transcription factor 68 140 - -
Glsi11g0362 404 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi11g0362 404 SMART sant 13 63 IPR001005 -
Glsi11g0362 404 SMART sant 66 114 IPR001005 -
Glsi11g0362 404 MobiDBLite consensus disorder prediction 125 156 - -
Glsi11g0362 404 CDD SANT 17 61 IPR001005 -
Glsi11g0362 404 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi11g0362 404 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi11g0362 404 Gene3D - 11 67 - -
Glsi11g0362 404 FunFam Myb transcription factor 11 67 - -
Glsi11g0362 404 Gene3D - 69 142 - -
Glsi11g0362 404 CDD SANT 69 109 IPR001005 -
Glsi11g0362 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi11g0362 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi11g0362 404 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0362 Glsi-ChrGlsi11 2317668 2319041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0362 1 155 MYB Transcription Factor Family AT4G01680 83.226 8.12e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g0362 Myb_DNA-binding 1.9e-14 CL0123