Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0345 ATGGCTTCTATAATAGGTGTTTCGTCTACATACCTGACTCCGTCTCTGGAACTCTTTAAAAGGGCAACAACAACAACTGCGGGTGCCACCACGTCCAGTTCGTTGCAATTGTCGGACAAGTCCCACTTTAACAACATTCTGAGAGCTCACCTAAGTAACAATGGTAGTGGCAACTTCAAGAGCGGGTTTAAGCCCAGAGTTAGCTTTGTTCCTTCGGCGATTGCCACTCCCAATTCTTCTGTTCTAAGTGAAGAAGCATTCAAGGGTATAGGTCATGGCTTCTCCGACAAAGACCCTTTGGATGATGTTATTCAAAACGAGGACTATGGCTTTGACTCTGTAACCGAGGCTTCTGCTGCTGACAACGAGGACGAGCTCGACATATCCAGGCTGGGCTTCCCTTCACGCCTTGTGGATTCACTCCTGAAACGTGGGATTACTCATCTTTTCCCCATTCAGAGATCTGTGTTACTACCTGCACTCGAAGGTCGAGATCTCATTGCTCGAGCAAAGACTGGGACTGGGAAGACATTGGCATTTGGGATTCCCATTATTAAACAGCTCAGTGATGATGAACAAGGAACCTCTCAGAGGCGATCTGGTCGTCTTCCTAAAGTATTGGTCCTTGCACCTACCAGAGAATTAGCGAAGCAAGTGGAGAAAGAGATAAAAGAATCTGCACCCTTTTTGAACACGGTTTGTGTTTATGGGGGTGTTTCTTATGTTACACAGCAAAATGCACTTTCCCGCGGGGTTGATGTTGTAGTTGGAACACCAGGTAGAATAATTGACCTAATAAATGGGAGCAGCCTTAAACTGAGTGAAGTTAAGTATTTGGTCCTTGATGAAGCTGATCAGATGCTTGCCGTTGGGTTTGAGGAGGATGTGGAAATAATTTTAGAAAAGCTCCCATCTGAGAGGCAGAGCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGAAGAAATTGGCAAGAAAACATTTGGACAATCCATTGACAATTGATCTGGTTGGCGAGCAAGAGGAAAAGCTTGCAGAAGGGATCAAACTTCATGCTATATCAGCCACTGCCACTTCAAAGCGCACAATTCTTTCTGATCTTATAACAGTTTATGCAAGGGGTGGGAAGACTATTGTTTTTACCCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCTTTAACAAATAGTATACCTTCTGAGGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTAAATGGTTTTCGGCAAGGGAAGTTCACAGTGCTTGTTGCCACTGATGTAGCAGCTCGAGGACTTGATATTCCTAATGTTGATTTGGTTATCCACTATGAACTTCCCAATGACCCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGGCGTGCAGGAAAGGAAGGTACTGCCATTCTGATGTACACCAGCAACCAGAGGAGAACAGTTAGATCTCTTGAGCGTGATGTAGGCTGTAAATTTGAATTTATTAGTCCACCAGCTATAGAAGAGATTTTGGAATCATCTGCTGAGCAAGTGGTTTCCACTCTTAATAGAGTTCATCCTGAATCGGTTGAATTTTTCACTCCAACTGCACAAAAGCTGGTTGAAGAACAAGGGACAAGTGCCCTTGCTGCTGCACTAGCACATCTAAGTGGATTTTCTCAACCTCCCTCATCTCGGTCTCTTATTAACCATGAACAGGGATGGGTTACATTGCAACTGACTCGAGATCCAGATGATTCTAGAAGATTTCTGTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCTGCTGCTGATGAAGTTGGAAAAATATATATAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTACTGAATCAGAAAATACCAACTGGAAACACTATTTCCAAGATCACTAAGTTGCCTCCATTGCAAGATGATGGGCCTCCTAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGAGCTAACCGAAGAGGTTCTGGAGATCGGAGAGGTTTTAAAACCTCGCGGGGAAGGGAAGGGGGCCTAGACTCTGATGATGAATTTGGTGATTCATATAGGAGAGGTGGTCGAAGTTATAGAACTGGCAATAGCTGGTCTCAAAGGACAAGAAGTAGTGGGGACTCTGATGAATTTGGTGGTGGTTCAAATAGGAGAGGTGGTCGAAGTTTTAGAACTGGCAATAGCTGGTCTCAAAAGGCAAGAAGCAGTGGGGATGATTGGCTAATTGGAGGTAGACGGTCAAGCAGGTCTTCATCATCGGACAGAAGCTTTGGAGGATCCTGTTTTAATTGTGGGCAATCTGGGCATCGGGCATCCGAATGTCCCAACAAACTAGGCTTGTAA 2400 0.4442 MASIIGVSSTYLTPSLELFKRATTTTAGATTSSSLQLSDKSHFNNILRAHLSNNGSGNFKSGFKPRVSFVPSAIATPNSSVLSEEAFKGIGHGFSDKDPLDDVIQNEDYGFDSVTEASAADNEDELDISRLGFPSRLVDSLLKRGITHLFPIQRSVLLPALEGRDLIARAKTGTGKTLAFGIPIIKQLSDDEQGTSQRRSGRLPKVLVLAPTRELAKQVEKEIKESAPFLNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGSSLKLSEVKYLVLDEADQMLAVGFEEDVEIILEKLPSERQSMLFSATMPGWVKKLARKHLDNPLTIDLVGEQEEKLAEGIKLHAISATATSKRTILSDLITVYARGGKTIVFTQTKRDADEVSLALTNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSNQRRTVRSLERDVGCKFEFISPPAIEEILESSAEQVVSTLNRVHPESVEFFTPTAQKLVEEQGTSALAAALAHLSGFSQPPSSRSLINHEQGWVTLQLTRDPDDSRRFLSARSVTGFLSDVYSPAADEVGKIYIIADERVQGAVFDLPEDIAKELLNQKIPTGNTISKITKLPPLQDDGPPSDFYGKFSDRDRANRRGSGDRRGFKTSRGREGGLDSDDEFGDSYRRGGRSYRTGNSWSQRTRSSGDSDEFGGGSNRRGGRSFRTGNSWSQKARSSGDDWLIGGRRSSRSSSSDRSFGGSCFNCGQSGHRASECPNKLGL 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0345 799 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 334 IPR014001 -
Glsi11g0345 799 FunFam ATP-dependent RNA helicase RhlE 118 337 - -
Glsi11g0345 799 SMART helicmild6 388 468 IPR001650 -
Glsi11g0345 799 CDD DEADc 137 335 - -
Glsi11g0345 799 MobiDBLite consensus disorder prediction 764 789 - -
Glsi11g0345 799 SMART ultradead3 145 351 IPR014001 -
Glsi11g0345 799 MobiDBLite consensus disorder prediction 644 799 - -
Glsi11g0345 799 Gene3D - 763 798 - -
Glsi11g0345 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 489 IPR027417 -
Glsi11g0345 799 MobiDBLite consensus disorder prediction 663 706 - -
Glsi11g0345 799 FunFam Nucleolar RNA helicase II 356 546 - -
Glsi11g0345 799 Gene3D - 349 550 IPR027417 -
Glsi11g0345 799 MobiDBLite consensus disorder prediction 709 730 - -
Glsi11g0345 799 MobiDBLite consensus disorder prediction 739 754 - -
Glsi11g0345 799 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 523 IPR001650 -
Glsi11g0345 799 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Glsi11g0345 799 Pfam GUCT (NUC152) domain 555 655 IPR012562 GO:0003723|GO:0004386|GO:0005524
Glsi11g0345 799 CDD SF2_C_DEAD 348 477 - -
Glsi11g0345 799 CDD GUCT_Hera 562 635 - -
Glsi11g0345 799 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 116 675 - -
Glsi11g0345 799 Pfam Zinc knuckle 779 795 IPR001878 GO:0003676|GO:0008270
Glsi11g0345 799 SUPERFAMILY Retrovirus zinc finger-like domains 767 797 IPR036875 GO:0003676|GO:0008270
Glsi11g0345 799 Gene3D - 127 338 IPR027417 -
Glsi11g0345 799 Pfam DEAD/DEAH box helicase 150 323 IPR011545 GO:0003676|GO:0005524
Glsi11g0345 799 Pfam Helicase conserved C-terminal domain 360 468 IPR001650 -
Glsi11g0345 799 ProSiteProfiles Zinc finger CCHC-type profile. 780 795 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0345 Glsi-ChrGlsi11 2216886 2223376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0345 152 490 Eukaryotic Initiation Factors Gene Family AT1G72730 38.218 1.45e-62 214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0345 11 2216886 2223376 Glsi11g0345 11 2216886 2223376 ECH