Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0339 ATGGGTATAAAGGGTTTAACTAAGCTTTTAGCGGACAGTGCCCCAAAAGCCATGAAGGAGCATCAATTCCAGAGCTATTTTGGCCGCGAGATTGCCATTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTCGTGGGAAGAAATGGGACTGAGATGCTCACCAATGAGGCTGGTGAAGTTACTAGTCATTTGCAAGGCATGTTTGCTCGGACAACCAGACTTCTAGAAGCCGGAATGAAGCCAGTTTATGTCTTTGATGGGAAGCCACCTGATTTGAAGAAACAAGAGCTGGCAAAACGGTATTTTATTTTCTCAAAGAGGGTTGATGCTAGTGAGGATTTGTCGAAAGCCATGGAGACGGGCAATAAGGAAGACATCGAGAAATTCAGTAAACGGACAGTGAAGGTGACAAAACACCATAATGAAGGCTGCAAAAGACTTTTAACACTCATGGGAGTGCCTGTCATTGAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCTTTAACGTTTGGAGCTCCTAGATTTCTTCGCCATTTAACGGATCCTAGCTCGAAGAAAGTTCCAGTGATGGAATTTGAAGTTGCAAAGATTTTGGAGGAGCTAAAGCTGACCATGGATCAATTTATTGACTTATGCATTCTTTCTGGGTGTGATTATTGTGAAAACATTCGAGGGATTGGTGGAAAGACTGCTTTGAAGCTCATTCGTCAACATGGCTCTATAGAGAATATATTGGAGAACATAAACAAAGAGAGCTCCCCCGATCTGATGTCTGGGCTCAATTGTTTGGCCTTTCTAAGGTACCGAATACCAGATGCTTGGCCATATCAGGAGGCTAGACAGCTTTTTAAAGAACCAGTAATCTTAACTGAAGAAGAGCAGCTTGATCTTAAGTGGGGGTTACTTTCATTTCTGGTAAATGAAAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGGAAAAATTAAAGCTGCAAAGAACAAGTTATCACAAGGCCGGTTGGAATCCTTTTACAAGCTAGTAGCAAATTCCTCTGCGCCCATTAAATGGAAGGAAAGCAAATGCATGCTTAAATCTTTCAAACCAGCACCTGAGCGTAAGATGTTATCTTGGCAACTAGCTAACTGGTCAAGGCCCATGGTCATTGGCAACTTGAGCTTGCCAATGCGTAATCTGGGTTCCAAGCTATCTGTGCTCTGCTTGGGACGCGCAAGGGACGCAATACGTGGTCAAAGCTCTAAAAGGGCCCAAATTAGAGGCTTGGGAGTCTGGGCTTTGCCTTGGGATGACATTTCTTTAGGTTCAAGAAGTGGCATACATATAGCTATCATGAAGCTCCCAGTCTCCTCACTGCTCCTCGTCACTCTTGCTCTGGTGTTAGCCACCGCCACTGCAGCAGATCCCGACCCTCTTCAAGATCTCTGTGTCGCCGACCTTACCTCCGGGGTGAAAGTGAACGGGTTCGCCTGCAAGCACGCTTCAAAGGTACATGCCTCTGACTTCTTCTCCGACATTCTAGCCAAAGCAGGAGGTACCAATAACACCTTTGGTTCCCTGGTGACTGGAGCCAATGTTCAAATAATCCCAGGACTCAACACTCTGGGTGTGTCCCTCTCGCGCATTGACTACGCCCCCGGTGGCCTCAACCCTCCTCACACCCACCCACGTGCCACCGAGATAGTTTTTGTGCTTGAGGGTCAATTGGATGTGGGGTTCATAACCACAGCCAATAAGCTTATATCAAAGACCATTACGAAGGGTGAGATATTTGTTTTCCCAAAAGGCTTAGTTCACTTCCAAAAGAACAATGGGAAGGTGGCTGCTGCTGTGATTGCAGCCTTCAACAGTCAATTGCCAGGTACACAGTCCATTGCCACCACCTTGTTCGCTGCCACACCGCCAGTTCCGGACCATGTATTGACGAAGGCATTCCAAGTGGGTACCAAGCAGGTTGAGAAGATCAAGTCTAGGCTCGCACCCAAGTAG 1995 0.4637 MGIKGLTKLLADSAPKAMKEHQFQSYFGREIAIDASMSIYQFLIVVGRNGTEMLTNEAGEVTSHLQGMFARTTRLLEAGMKPVYVFDGKPPDLKKQELAKRYFIFSKRVDASEDLSKAMETGNKEDIEKFSKRTVKVTKHHNEGCKRLLTLMGVPVIEVYAVASEDMDSLTFGAPRFLRHLTDPSSKKVPVMEFEVAKILEELKLTMDQFIDLCILSGCDYCENIRGIGGKTALKLIRQHGSIENILENINKESSPDLMSGLNCLAFLRYRIPDAWPYQEARQLFKEPVILTEEEQLDLKWGLLSFLVNENGFNSDRVTKAIGKIKAAKNKLSQGRLESFYKLVANSSAPIKWKESKCMLKSFKPAPERKMLSWQLANWSRPMVIGNLSLPMRNLGSKLSVLCLGRARDAIRGQSSKRAQIRGLGVWALPWDDISLGSRSGIHIAIMKLPVSSLLLVTLALVLATATAADPDPLQDLCVADLTSGVKVNGFACKHASKVHASDFFSDILAKAGGTNNTFGSLVTGANVQIIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVGFITTANKLISKTITKGEIFVFPKGLVHFQKNNGKVAAAVIAAFNSQLPGTQSIATTLFAATPPVPDHVLTKAFQVGTKQVEKIKSRLAPK 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0339 664 SUPERFAMILY PIN domain-like 2 220 IPR029060 -
Glsi11g0339 664 FunFam germin-like protein subfamily 2 member 1 469 663 - -
Glsi11g0339 664 CDD PIN_FEN1 4 327 - -
Glsi11g0339 664 CDD cupin_OxOx 470 661 IPR001929 GO:0030145
Glsi11g0339 664 FunFam Flap endonuclease 1 1 159 - -
Glsi11g0339 664 ProSitePatterns Germin family signature. 550 563 IPR019780 GO:0030145
Glsi11g0339 664 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 357 IPR006084 -
Glsi11g0339 664 Pfam XPG N-terminal domain 1 102 IPR006085 GO:0004518
Glsi11g0339 664 SMART 53exo3 28 307 IPR002421 GO:0003677
Glsi11g0339 664 Hamap Flap endonuclease 1 [fen]. 1 342 IPR023426 GO:0016788
Glsi11g0339 664 SMART xpgineu 150 205 IPR006086 GO:0004518
Glsi11g0339 664 SMART Cupin_1_3 506 655 IPR006045 -
Glsi11g0339 664 Pfam Cupin 511 654 IPR006045 -
Glsi11g0339 664 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 153 173 IPR006084 -
Glsi11g0339 664 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Glsi11g0339 664 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Glsi11g0339 664 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 210 225 IPR006084 -
Glsi11g0339 664 Gene3D - 205 287 - -
Glsi11g0339 664 Pfam XPG I-region 159 220 IPR006086 GO:0004518
Glsi11g0339 664 Gene3D - 2 204 - -
Glsi11g0339 664 SUPERFAMILY RmlC-like cupins 470 660 IPR011051 -
Glsi11g0339 664 FunFam Flap endonuclease 1 205 287 - -
Glsi11g0339 664 Gene3D Jelly Rolls 469 663 IPR014710 -
Glsi11g0339 664 CDD H3TH_FEN1-Euk 208 291 - -
Glsi11g0339 664 SMART xpgn3 1 111 IPR006085 GO:0004518
Glsi11g0339 664 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 205 346 IPR036279 -
Glsi11g0339 664 SMART HhH_4 207 240 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0339 Glsi-ChrGlsi11 2184381 2193704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0339 1 405 Core DNA Replication Machinery Family AT5G26680 68.224 0.0 578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0339 11 2184381 2193704 Glsi11g0339 11 2184381 2193704 ECH