LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g0335	ATGGGAAGGCACTCCTGCTGTTACAAGCAGAAGCTAAGAAAAGGCCTCTGGTCACCTGAGGAAGACGAGAAGCTTCTCAATTATATCACCAAGCATGGCCTTGGATGTTGGAGCTCTGTCCCCAAACTAGCCGGTTTGCAGAGGTGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTATCTTAGGCCTGATTTGAAGAGAGGAGCTTTCTCACAACAGGAAGAGACTTTGATAATTGAACTTCATGCAGTACTGGGCAATCGGTGGTCTCAGATTGCAGCTCAGTTACCGGGAAGAACTGACAATGAGATAAAAAATCTATGGAACTCCTGTCTCAAGAAAAAGCTTAGGCAAAGAGGCATTGACCCAAACACCCACAAACCGCTCTCTGGGGTTGAGAACGACGAGGACAAAAACCATCAGAAAGCCTCGGCATCCAATGAACCGAGTCAGGCTGAGTCAACGAAACCACTTGAAGTTTCTTCCGGCTCCAAGATCAACAAGATCACTAGTAGTAACAACAATTTAAGCCAGGATTTATATCTAGATAGGTTTGGTAGCTCCATGACCAGTTGTAGACCTTCTGATATGATGGGTTATTTCTCTTTCCAGCAGATGAACTATGCACCAAATCCCAACCCTTCTGTTTGCTTCATTCCCAGTTCCAGTTCCCCTCATGTGATGTCAGAGCCCGCTATGCTTCATTCCGTGTCAAGCTCCATTTTGCCAACTTCAACCCATGTAAAGCCCAGCGTTAGTCTCCAATCTAATAATCCTTCCATATCCTCTGGCGATATTGATGGTGTTCAGACCTGGGAAGCCAGTACCTTCGGTAATAATGGTGGCAAAAGCAACGGAAGCAGTGGCAGTATCCATTTTCAAGGCAGCGCTAACTTTCTTGATAATAACACTTTAACATGGGAACTGGCAGAGTGTGTGAAGGCTGGTAAAGATACGGGTACCCATGTACCCTTACAACCAGAACAAGAAGATATAAAATGGTCTGAGTATCTCAACACCCCGTTTTTTATGGGAAACACTCTGCAGAATCAAACCTCTCAATCTATCTACAGTAAGGTTAAACCAGAAACAGGCTTCATGGCAGATGAGTCGAGTACTAGTTGGCACCATACCCAACACCCGCAAGTTTTTCAAGCTTCAGATATATATGCCAAGGATCTGCAAAGACTTTCAGTGGCTTTTGGACAAACCCTTTAG	1218	0.4499	MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGLGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEETLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSGVENDEDKNHQKASASNEPSQAESTKPLEVSSGSKINKITSSNNNLSQDLYLDRFGSSMTSCRPSDMMGYFSFQQMNYAPNPNPSVCFIPSSSSPHVMSEPAMLHSVSSSILPTSTHVKPSVSLQSNNPSISSGDIDGVQTWEASTFGNNGGKSNGSSGSIHFQGSANFLDNNTLTWELAECVKAGKDTGTHVPLQPEQEDIKWSEYLNTPFFMGNTLQNQTSQSIYSKVKPETGFMADESSTSWHHTQHPQVFQASDIYAKDLQRLSVAFGQTL	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g0335	405	FunFam	Myb transcription factor	11	67	-	-
	Glsi11g0335	405	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Glsi11g0335	405	MobiDBLite	consensus disorder prediction	129	143	-	-
	Glsi11g0335	405	PANTHER	MYB DOMAIN PROTEIN 55	1	280	-	-
	Glsi11g0335	405	Pfam	Myb-like DNA-binding domain	67	111	IPR001005	-
	Glsi11g0335	405	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Glsi11g0335	405	CDD	SANT	17	61	IPR001005	-
	Glsi11g0335	405	FunFam	MYB transcription factor	68	140	-	-
	Glsi11g0335	405	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Glsi11g0335	405	SMART	sant	13	63	IPR001005	-
	Glsi11g0335	405	SMART	sant	66	114	IPR001005	-
	Glsi11g0335	405	MobiDBLite	consensus disorder prediction	144	170	-	-
	Glsi11g0335	405	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Glsi11g0335	405	MobiDBLite	consensus disorder prediction	119	170	-	-
	Glsi11g0335	405	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Glsi11g0335	405	CDD	SANT	69	109	IPR001005	-
	Glsi11g0335	405	Gene3D	-	68	152	-	-
	Glsi11g0335	405	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Glsi11g0335	405	Gene3D	-	11	67	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g0335	Glsi-ChrGlsi11	2152554	2153973	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g0335	1	405	MYB Transcription Factor Family	AT1G09540	49.403	3.92e-120	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi11g0335		Myb_DNA-binding	2.5e-15	CL0123