Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0333 ATGCCTCTGTATGAGTTATACCGGATGGCTAAAGCAAATCCTGATTCTAAAGACATAATCAGTACATGTACAACTGATCAATCTTCCGCACCTGAGAATGACTTTTTTGAGTTGGTTTGGGAAAATGGTCAGATTTCAATGCAGGGTCAGTCCAGTAGAGCTGCTAGAAAGAGCCCGACTTGCAAGAGTTTTCCATCTCACTGCTTACCATCTCACAGTCCCAATATAAGAGATAAAGATGTGGGACACGGCACCATTACCAGGATGGGTAAGTTTGGGGATTTAGACTCTGGATTGAATGAAATTCCAATGTCGGTGCCATCGGGTGAAGTGGATTTGAGCCCAGATGAAGACGTGATACCTTGGTTGAATTATACGATGGATGACTATTTGCAAGAATATAATTCTGATTTTTTGTATGAACTATCAGGGGACAACGTAAATGAGATCCCTGCCTCAAATAACTTTTCTCTTATGGATAAAAGACATAATTGTAATCAGGTATTAAGGGACTTTCATAAAAATCCCATGCGGGGTGTTTCAAGTTCAGAACAAGGGATCATTTCCAAGGGATTTTCAGCTGGAGAAGTTGAGACAACTAGACCTAAAGCTGGCACCGGTCAGCTATACCCTCCATCATCACAGCAATGTCAAACATTATTTCCATCTGTTAGATCCAGAGTATCTGATATCACTGAAAATAATACAAGTAATGCCGCCCTGCATGCACCTTATGGGGAAACCATTCAGATTCCATCTGCCTCTAGCGGGTTATCTAGCTTGAAGATGCAGAAGTATGATTCAATAATGCCAAGTAATAGTTCCACTTCCACCTTAATGAACTTCTCCCATTTTGCAAGACCTGCGGCTATTGTTAGAGCCAGTCTTGAGAGCATTGGTTTGATGTCTGGTTCGGCTTTAGCAAAACCAGAAAGCTTGGTAAATAAGAACAAAGATGCTGCTGCAACCAGCGGCAATCCTTCTGAATCAACCCTTATTGGTTCCGGGAGTGAATTTCCAAGGGAATCAAATATGCATAGACCACAGGATATGGAGCTCTCCAAGGCTGATTTGAAACCGTTGGAACCAAAATCTCTTGAACAGAATGCTGCTGCTTCTAAACAGTCTAACCCCGCCTGTAAAAAGGACGCCTTTAAGGATGATCAAGCCTCTAATCAAGTTCTTGTTGAAAGTGGCACTATAGGACATACAGCTGTTGAAAAAAACACGGAGCAGGTAGTGGCCTCTTCCTCTGTTTGCTCTGGCAATGGCATGGAGAGGGGTTCAGACAACTCAAATCAAAATTTGAAGCAAAAAAGTCGGGATACAGAGGACTCTGAGTGCCATAGCGAAGATGTTGAGGAAGAATCAGTGGGTCTTAAAAGGGCAGCTCCTGCACGAGAAGGTGTGGGTTCCAAGAGAACCCGTGCAGCCGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAACGAGAAGATGCGTGCATTACAAGAGCTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGTTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGGTGGTTTATATATGCCTCCGATGATGTTACACCCTGGAATGCAGTACATGCATGCACCACAAATGTCTCCATTTCCACCCATGGGTGTTGGCATGCAAATGGGATTAGGAATGGGATATGGGATAGGTATGCCGGACGTGAATGGTGGATCTTCTAGATTTCCAATTATTCAGGTCCCCCAAATGCAAGGAACTCACTTCTCTGTTCCCCCTATGTCCGGACCCACTGTTTTACATGGGATGGAAAGATCAAATCCTCAAGTGTTTGGGTTTCCTGGTCAGGGACTTCCCGTAACAACGACACGATCCCCTGTAATTCCTTTGACAGGAGTACCTCCTATGAACTCATCGGCTTTGGGACAAAATGCCTGTGGAACAGCTGGACTTATGGAAACTGTGGATTCAGCTTCAGCCTCTGGCTTAAAGGATCCTGTGAACTCCCAAGTTGTGCAAAGCACCGGCTGCGGTAACCCAACAAGTCAGATTTCAGCCCAGAAGATGCTTGAGGAGGACGCTCAATTTACGAGTACTCTTCCTCAAGATTGTCAATTGTCAATTTTTGCAAAACTGCTAAATTTGTCTTCAGTCAAGTGGAAACAACTTTATGGGGGCGTGAAGGATTAG 2229 0.4374 MPLYELYRMAKANPDSKDIISTCTTDQSSAPENDFFELVWENGQISMQGQSSRAARKSPTCKSFPSHCLPSHSPNIRDKDVGHGTITRMGKFGDLDSGLNEIPMSVPSGEVDLSPDEDVIPWLNYTMDDYLQEYNSDFLYELSGDNVNEIPASNNFSLMDKRHNCNQVLRDFHKNPMRGVSSSEQGIISKGFSAGEVETTRPKAGTGQLYPPSSQQCQTLFPSVRSRVSDITENNTSNAALHAPYGETIQIPSASSGLSSLKMQKYDSIMPSNSSTSTLMNFSHFARPAAIVRASLESIGLMSGSALAKPESLVNKNKDAAATSGNPSESTLIGSGSEFPRESNMHRPQDMELSKADLKPLEPKSLEQNAAASKQSNPACKKDAFKDDQASNQVLVESGTIGHTAVEKNTEQVVASSSVCSGNGMERGSDNSNQNLKQKSRDTEDSECHSEDVEEESVGLKRAAPAREGVGSKRTRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGGGLYMPPMMLHPGMQYMHAPQMSPFPPMGVGMQMGLGMGYGIGMPDVNGGSSRFPIIQVPQMQGTHFSVPPMSGPTVLHGMERSNPQVFGFPGQGLPVTTTRSPVIPLTGVPPMNSSALGQNACGTAGLMETVDSASASGLKDPVNSQVVQSTGCGNPTSQISAQKMLEEDAQFTSTLPQDCQLSIFAKLLNLSSVKWKQLYGGVKD 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0333 742 Pfam Helix-loop-helix DNA-binding domain 480 526 IPR011598 GO:0046983
Glsi11g0333 742 MobiDBLite consensus disorder prediction 367 386 - -
Glsi11g0333 742 Gene3D - 471 533 IPR036638 GO:0046983
Glsi11g0333 742 PANTHER TRANSCRIPTION FACTOR PIF3 1 696 IPR044273 GO:0003700|GO:0006355
Glsi11g0333 742 MobiDBLite consensus disorder prediction 318 353 - -
Glsi11g0333 742 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 476 525 IPR011598 GO:0046983
Glsi11g0333 742 SMART finulus 482 531 IPR011598 GO:0046983
Glsi11g0333 742 MobiDBLite consensus disorder prediction 318 338 - -
Glsi11g0333 742 FunFam Basic helix-loop-helix transcription factor 471 534 - -
Glsi11g0333 742 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 535 IPR036638 GO:0046983
Glsi11g0333 742 MobiDBLite consensus disorder prediction 437 488 - -
Glsi11g0333 742 MobiDBLite consensus disorder prediction 407 436 - -
Glsi11g0333 742 CDD bHLH_AtPIF_like 476 538 IPR047265 -
Glsi11g0333 742 MobiDBLite consensus disorder prediction 407 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0333 Glsi-ChrGlsi11 2138468 2141956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0333 1 615 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.068 6.38e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g0333 HLH 8.2e-14 No_clan