Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0326 ATGATGCACCCCTCTCGAGTCTTCTATTCGTCCTCTGAAGCTTCACGTGACAAACCAATATGCAACGAGGACTCGATCATATCGGAGCTATTTTGCCAGACGTTTAGCACTTATTTATATCAAGGTATTCGCTTTCTTAGATTACTATACAAAATGGACCATCGATGGACCAAAGGTAGGCAGGAAACTGGTGTCCGTGATAGGAGGCAGTTTGGAAAGGAACAGACATATCAAGACTCCCTTATTGAGGATATGACAGAGGATTTCCGATTGCCAATCAACCAAAGGCCCACAGAAAATGTTGATCTTGATAACGTGGAACAGGCATCTCTAGACACTCAGTTGTCTTCGTCAAATATTGGATTTAAGCTTCTTCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAGCAAGGAATTATTGAGCCAATAAAATCTGGAATTAGAGATCCAAGATTGGGGGTTGGTAAACAAGAAGAAGATGATTTCTTCACTGCAGAAGAAAATATCCAGCGAAGAAAACTTGATGTTGAGTTAGAGGACACAGAGGAACATGCGAGGAAGCGGGAGGTGTTAGCAGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAAATCCGAAAAGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTAGCAATGGAATTTGAAGCACACCTGAGCTCTTATGATCACAATCACAGAAAGCGATTCAAGCAAATGAAGGAAATGCATGGTAGTAGTAGCCGGGATGATAGGCAAAAGCGAGAACAGCAACGACAGGAGAGAGAAATGGCTAAGTTCGCTCAAATTGCTGATGCCCACAAGCAACAACAGCTTCAACAGCAACAAGAAGAACCTGGATCTGCTACAGTCTCCTCTGAATCTAGAACTGCTACTGCACTTGCTGATCAGGAGCAGCGGAAGACTCTGAAGTTTGGGTTTTCTTCCAAAGGCAGTGTTTCCAAGAACTCATTTGGGGGATCTGCAAAGAAGCCAAAAGCTGCTGTGTCCTCTATATTCAGCAATGACACTGATGAAGAATAG 1059 0.4268 MMHPSRVFYSSSEASRDKPICNEDSIISELFCQTFSTYLYQGIRFLRLLYKMDHRWTKGRQETGVRDRRQFGKEQTYQDSLIEDMTEDFRLPINQRPTENVDLDNVEQASLDTQLSSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRRKLDVELEDTEEHARKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEREMAKFAQIADAHKQQQLQQQQEEPGSATVSSESRTATALADQEQRKTLKFGFSSKGSVSKNSFGGSAKKPKAAVSSIFSNDTDEE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0326 352 ProSitePatterns Zinc finger C2H2 type domain signature. 214 236 IPR013087 -
Glsi11g0326 352 MobiDBLite consensus disorder prediction 278 331 - -
Glsi11g0326 352 MobiDBLite consensus disorder prediction 243 352 - -
Glsi11g0326 352 ProSiteProfiles G-patch domain profile. 117 162 IPR000467 GO:0003676
Glsi11g0326 352 SMART G-patch_5 115 160 IPR000467 GO:0003676
Glsi11g0326 352 MobiDBLite consensus disorder prediction 243 274 - -
Glsi11g0326 352 Pfam G-patch domain 118 158 IPR000467 GO:0003676
Glsi11g0326 352 Pfam Zinc-finger double-stranded RNA-binding 212 239 IPR022755 -
Glsi11g0326 352 SUPERFAMILY beta-beta-alpha zinc fingers 200 240 IPR036236 -
Glsi11g0326 352 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 52 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0326 Glsi-ChrGlsi11 2108719 2114896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0326 52 352 C2H2 Transcription Factor Family AT5G26610 66.447 1.28e-128 369