Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0321 ATGGGCGGAGGTGGAGCAGCGCCGTACGCGGAGTCGCAGTACGTCTCCGCCAAGACGTCCGTTTGGTGGGACATAGAGAACTGCCATGTCCCCAAAGGTTGCGATCCACACGCCATCGCCCAGAACATAAGCTCCGCGCTTGTTAAGATCAACTATTCTGGGCCCATCTCCATCTCCGCCTATGGTGATACTACACGCATCCCGGCCTCTGTACAGCACGCTCTTTCCAGTACCGGAATCTCCCTCAATCATGTCCCTGCTGGTGTTAAAGATGCTAGTGATAAGAAGATCCTTGTCGACATGTTGTTCTGGGCTGTGGACAATCCTGCACCTGCTAATTATTTTTTAATTTCTGGTGACCGAGACTTCTCTAATGCTCTTCATCAATTGAGGATGAGGAGATATAATATTCTTCTTGCACAACCTCAGAAAGCATCTGCACCGCTTGTTGCAGCTGCCAAGAGTGTATGGCTTTGGACTACTCTCATAGCTGCAGGACCTCCTCTAAGTAATGGCGAATCACAACAACTTTGTAATAATAGCTTCCTATCATGTTCTGACACTTTACAAGTTCCAGTTTCTAATGCTGTTCAGACAAAGCAACACAAGGATTCCTATTCTGAAGTTCATATAGGAAATGAGATATTTCCAAATGCAGGAGGGGGATTTGATTCTAGATATCAGGGGAATACAAACAGGAGAAACCCAGGTCAACAAAATGGACCCAAACCCATGAATCCAGCATTTGGATTACAAGAAAATCGTAACAATATAAACTCTTTTCGTCCCAGCAACTATAACCCAACTGTTCCTCCAAGGGGATCTGCTCCAAATTTTGTTCATGGCAATCCTGATCAGTTGTGGAACAGTAACGGTATTCAACAGGGAAATTATCCAAATTCTTATTCACAGCCATTAAGACCAAACGGTTTTCCACTGCAACCTGCTTTTGCACCAAGTAATATATATCCACCTAATTCACATACTTTTCCTACTTCACCAGTGCCTCCAAGGACTGGTGGACCCAGCTTCACCTCAAGACCTCTTACAAATATGCCCGATATTGGTAATCTGAATATTTCTGGATATCCCAACATTGTTCATCATTCCCATACAGTTCAGCAATGGAGTGGGGAGTTGAAACAGAATCCTAACCAAAATGCTTCACATCCTGTAAGGTCAACTGACGAACAAAGTGGGCATATAGTACATAAAACACAACAGCCATACCCTGGTCACCCTCATGGTCCAGAATATCCACCTACATCTTTGGCAGCAATGGATAATAATAACCTTCAAGGTAATGGTATGTGGGGATTGCCCGGATGCCCTAAACCTTCTGAATATGTCCAAGGCCTTATAGGGATTGTATTACTTGCCTTGAACACACTAAAATATGAAAAGATTATGCCAACTGAGGCAAATATCACTGATTGCATTCGTTATGGAGATCCAAAGCACTGCAACACTGATATTAAGAAGGCTCTGGAGAGTGCTATTGAACAGAAGATGGTGGTGAAACAGAATTTAGGTGCTTTGCAGTTTTATGTTGGTAAGAATGATAAACTTTGGAAGTGTACAAACCCTATAGGTGGTAATCCTAAGCAGCACTCGAAAGAAACATGGAATGAACTTCAAAAATTTTTAGCAACCCCTTCTGGAAAATCAGCCATAATGGGTACTCAGTGCAAGTATGAAGCAGCTACTGTGATAAAGAATATGTGCTTCAAAGATCTTGCTTTGGGCAATGTCCTTCAGATTTTGAACATGGCAGTTACCCATAAGAAATGGATTGTGCATCATCAGTCCGGTTGGCAACCCCTTAACATTACTCTTCCCGAGACCAACTCTAGTTTGGGGAAGTGGTCTAAGTCAGATAGTTCAAGGACTATGGAATGCAAGTCCAGAAACTGTTGCATGAGATTTTGTTCATTGATGGTTATATCTTCAAGTTGTTTCAATAAGCATAACAAACGGACAGAGAATACGCGTAAACTCAGCAAAACTGAAGGAAACGGCACTAATAAGTTCCTCCATGAAGCTTATGAGTCATTATTTCGCTCCAATACCAGTAAGCTTTTGGAATGTCTGGCTCAAAACACAATTCGGTCATTCGATAGTAATTTGATTTCTGGTCCTGTTGCTTTCAGTTCTCTTGTTATGTTAGTAGTTGCGTGTGTGATCCACAGGAAAGATGACTCTTTGCATCATATATTTGTTCTATTGTATGCTCTCAGCTTTTGA 2244 0.4229 MGGGGAAPYAESQYVSAKTSVWWDIENCHVPKGCDPHAIAQNISSALVKINYSGPISISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYFLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTTLIAAGPPLSNGESQQLCNNSFLSCSDTLQVPVSNAVQTKQHKDSYSEVHIGNEIFPNAGGGFDSRYQGNTNRRNPGQQNGPKPMNPAFGLQENRNNINSFRPSNYNPTVPPRGSAPNFVHGNPDQLWNSNGIQQGNYPNSYSQPLRPNGFPLQPAFAPSNIYPPNSHTFPTSPVPPRTGGPSFTSRPLTNMPDIGNLNISGYPNIVHHSHTVQQWSGELKQNPNQNASHPVRSTDEQSGHIVHKTQQPYPGHPHGPEYPPTSLAAMDNNNLQGNGMWGLPGCPKPSEYVQGLIGIVLLALNTLKYEKIMPTEANITDCIRYGDPKHCNTDIKKALESAIEQKMVVKQNLGALQFYVGKNDKLWKCTNPIGGNPKQHSKETWNELQKFLATPSGKSAIMGTQCKYEAATVIKNMCFKDLALGNVLQILNMAVTHKKWIVHHQSGWQPLNITLPETNSSLGKWSKSDSSRTMECKSRNCCMRFCSLMVISSSCFNKHNKRTENTRKLSKTEGNGTNKFLHEAYESLFRSNTSKLLECLAQNTIRSFDSNLISGPVAFSSLVMLVVACVIHRKDDSLHHIFVLLYALSF 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0321 747 CDD PIN_limkain_b1_N_like 18 142 - -
Glsi11g0321 747 Gene3D - 12 161 - -
Glsi11g0321 747 MobiDBLite consensus disorder prediction 313 350 - -
Glsi11g0321 747 MobiDBLite consensus disorder prediction 219 250 - -
Glsi11g0321 747 MobiDBLite consensus disorder prediction 224 242 - -
Glsi11g0321 747 PANTHER LIMKAIN B LKAP 16 501 IPR024768 GO:0005777|GO:0010468
Glsi11g0321 747 Pfam NYN domain 18 154 IPR021139 GO:0004540
Glsi11g0321 747 MobiDBLite consensus disorder prediction 373 397 - -
Glsi11g0321 747 Pfam OST-HTH Associated domain 562 619 IPR025677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0321 Glsi-ChrGlsi11 2088489 2092504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0321 10 258 C2H2 Transcription Factor Family AT5G61190 58.566 2.67e-82 281