Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0302 ATGTCTCTGCGACCCAGCTCTCGTACGGAGGCGCGGAAGAAGTCGTACAAAACGGGAGTGGACGCTGACGACGCTAGGAGAAGGAGGGAAGACAACCTGGTTGAGATCAGGAAGAACAAGCGCGAGGACAATCTCCTCAAGAAGAGAAGGGAGGGACTTCTTCTGCAGGCCCAGCAATTACTCGATGTTTCAAATAATGCCGCTTCCCTCGAGAACAGATTGGAAGGCATTCCTGTGATGGTGCAAGGGATATGTTCTGACGACCCTGCAGCACAATTGGAAGCAACTACACAGTTCAGAAAACTATTATCAATTGAGCGCAGCCCTCCTATTGATGAGGTCATCAGAGCAGGTGTTGTCCCTAGGTTTGTGGAGTTCTTAGGAAGGCATGATGTACCCCAATTGCAGTTTGAAGCTGCATGGGCTTTGACCAATGTTGCATCTGGAACATCTGAGCACACAAGAGTGGTCATTGAACATGGTGCTGTTCCTCTGTTTGTACAGCTTCTGAGCTCTAGTAGTGATGACGTCAGAGAACAGGCTATATGGGCATTAGGTAATGTTGCTGGTGATTCCCCAAGCTGTAGGGACCTTGTTGTTAACCATGGTGCACTCTTGCCATTACTGTCTCAATTGAATCAACACTCAAAGTTATCTATGTTGAGGAATGCTACATGGACTCTATCTAACTTTTGCCGTGGAAAGCCTCCAACACCTTTTGAACAGGTAAAGCCTGCCTTGCCTGTCCTTCAGCAGCTCATTTACTTAACTGATGAAGAAGTTCTAACAGATGCGTGCTGGGCTCTCTCTTACCTTTCAGATGGCCCAAATGAGAAAATTCAAGCTGTGATTGAAGCGGGAGTCTGCCCACGACTTGTGGAGCTTCTTCTGCATCAGTCATCTAAAGTTCTTATACCTGCTCTTCGAACTGTGGGAAATATTGTTACTGGTGATGATACTCAGACTCAGTTTGTAATTGAAAATCAAGTGCTCCCCTGCCTTCACCAACTTCTCACTCAAAATCACAAAAAAAACATCAAGAAAGAAACTTGTTGGACAATTTCAAATATCACAGCTGGAAATAAAGCTCAAATTCAGGCTGTCATTGAGGCCAATATTATTCTTCCTCTCGTACATCTTCTTCAGCATGCCGAGTTTGATATCAAGAAGGAGGCAGCATGGGCCATCTCCAATGCCACTTCTGGAGGGTCCCACGAGCAGATTCAGTTCCTGGTGAGTCAAGGTTGCATTAAGCCACTGTGTGATCTCTTGACCTGTCCAGACCCGAGGATTGTTACAGTGTGTCTTGAGGGCCTAGATAACATTTTAAAGGTGGGTGAAGCTGACAAGGAAATGGGACTACATGGTGGAGTCAACATTTATGCGCAGATGATTGATGAATGTGAAGGATTGGATAAGATTGAAAATTTGCAGACGCATGACAACAACGAGATTTATGAGAAGGCTGTGAAGATTTTGGAGAGATATTGGGCTGAGGAAGAAGAGGAAAATCAGAATGTCCAGAATGGTGGGGATGGTAATCAACAAGGTTTTTCTTTCGGGAATAACCAGCCCAACGTCCCCCCAGGTGGTTTTAATTTTTGA 1605 0.4542 MSLRPSSRTEARKKSYKTGVDADDARRRREDNLVEIRKNKREDNLLKKRREGLLLQAQQLLDVSNNAASLENRLEGIPVMVQGICSDDPAAQLEATTQFRKLLSIERSPPIDEVIRAGVVPRFVEFLGRHDVPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPLFVQLLSSSSDDVREQAIWALGNVAGDSPSCRDLVVNHGALLPLLSQLNQHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPVLQQLIYLTDEEVLTDACWALSYLSDGPNEKIQAVIEAGVCPRLVELLLHQSSKVLIPALRTVGNIVTGDDTQTQFVIENQVLPCLHQLLTQNHKKNIKKETCWTISNITAGNKAQIQAVIEANIILPLVHLLQHAEFDIKKEAAWAISNATSGGSHEQIQFLVSQGCIKPLCDLLTCPDPRIVTVCLEGLDNILKVGEADKEMGLHGGVNIYAQMIDECEGLDKIENLQTHDNNEIYEKAVKILERYWAEEEEENQNVQNGGDGNQQGFSFGNNQPNVPPGGFNF 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0302 534 Pfam Armadillo/beta-catenin-like repeat 151 189 IPR000225 GO:0005515
Glsi11g0302 534 Pfam Armadillo/beta-catenin-like repeat 361 400 IPR000225 GO:0005515
Glsi11g0302 534 Pfam Armadillo/beta-catenin-like repeat 405 442 IPR000225 GO:0005515
Glsi11g0302 534 Pfam Armadillo/beta-catenin-like repeat 277 315 IPR000225 GO:0005515
Glsi11g0302 534 Pfam Armadillo/beta-catenin-like repeat 192 233 IPR000225 GO:0005515
Glsi11g0302 534 Pfam Armadillo/beta-catenin-like repeat 108 148 IPR000225 GO:0005515
Glsi11g0302 534 Pfam Armadillo/beta-catenin-like repeat 321 359 IPR000225 GO:0005515
Glsi11g0302 534 SMART arm_5 235 274 IPR000225 GO:0005515
Glsi11g0302 534 SMART arm_5 150 190 IPR000225 GO:0005515
Glsi11g0302 534 SMART arm_5 404 444 IPR000225 GO:0005515
Glsi11g0302 534 SMART arm_5 361 401 IPR000225 GO:0005515
Glsi11g0302 534 SMART arm_5 107 148 IPR000225 GO:0005515
Glsi11g0302 534 SMART arm_5 192 233 IPR000225 GO:0005515
Glsi11g0302 534 SMART arm_5 276 316 IPR000225 GO:0005515
Glsi11g0302 534 SMART arm_5 318 359 IPR000225 GO:0005515
Glsi11g0302 534 Gene3D - 76 498 IPR011989 -
Glsi11g0302 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Glsi11g0302 534 PIRSF Importin_alpha 2 534 IPR024931 GO:0005737|GO:0006606|GO:0061608
Glsi11g0302 534 Gene3D - 10 50 IPR036975 GO:0006606
Glsi11g0302 534 FunFam Importin subunit alpha 75 498 - -
Glsi11g0302 534 SUPERFAMILY ARM repeat 7 501 IPR016024 -
Glsi11g0302 534 Pfam Atypical Arm repeat 459 507 IPR032413 -
Glsi11g0302 534 MobiDBLite consensus disorder prediction 503 534 - -
Glsi11g0302 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 161 IPR000225 GO:0005515
Glsi11g0302 534 PANTHER IMPORTIN ALPHA 12 503 - -
Glsi11g0302 534 MobiDBLite consensus disorder prediction 501 534 - -
Glsi11g0302 534 FunFam Importin subunit alpha 11 50 - -
Glsi11g0302 534 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Glsi11g0302 534 MobiDBLite consensus disorder prediction 1 30 - -
Glsi11g0302 534 Pfam Importin beta binding domain 12 97 IPR002652 GO:0006606|GO:0061608
Glsi11g0302 534 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0302 Glsi-ChrGlsi11 1993940 2000633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0302 290 466 U-box Gene Family AT5G67340 23.729 3.21e-06 48.1