Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0299 ATGGCATCTTTGGAGTTAAACGTAGATTCTAATAATTCAGAACGCAGCCAGAAGAAACGCAGGAAAATCGGGGATGATAACGACAAGGATCAGAATTCGCTCAAACCGAGTCCATGGAGATCCGAGTCAGAGCAGCGGATCTACTCCTCCAAGCTCGTCGAAGCTCTCCGCCACGTTCTTCGCCGGAGTCCTTCTGCTGCGGCCAAGCAAAGCGGCGGACGTGAAGTTCGCGACATCGCCGACAGAGTTCTAGCGGGGACGGCCAAGGGCAGAACTCGCTGGAGTCGAGCGATTCTGACCACTCCACTCAGCCGATGGAAGTTCAGGAGGCAGCATAAGAAGGTGAAGAAGGCGGCCAACGGATTGAAGAAGCCGAAGATTAGGAGAGAGAGAAGAAGGTTACCGGATGTGCAGAAGAAACAGCGCGTTCTCGGCCGGTTAGTTCCCGGTTGCCGAAAGGCCTCGTTTCCGAGTCTTCTCGAAGAAACCACTGATTATATTTCGGCCTTGGAAATGCAAGTGCGAGCCATGACAGCGCTTACCGAGCTACTAACCGGTGGCGCGCCGGCCGATCGGCTCGGACGGCCTCGACCGTGA 597 0.5528 MASLELNVDSNNSERSQKKRRKIGDDNDKDQNSLKPSPWRSESEQRIYSSKLVEALRHVLRRSPSAAAKQSGGREVRDIADRVLAGTAKGRTRWSRAILTTPLSRWKFRRQHKKVKKAANGLKKPKIRRERRRLPDVQKKQRVLGRLVPGCRKASFPSLLEETTDYISALEMQVRAMTALTELLTGGAPADRLGRPRP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0299 198 Gene3D - 109 187 IPR036638 GO:0046983
Glsi11g0299 198 MobiDBLite consensus disorder prediction 12 35 - -
Glsi11g0299 198 CDD bHLH_AtIBH1_like 128 181 IPR044549 GO:0006355
Glsi11g0299 198 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Glsi11g0299 198 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 41 184 IPR044660 GO:0006355
Glsi11g0299 198 MobiDBLite consensus disorder prediction 1 44 - -
Glsi11g0299 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0299 Glsi-ChrGlsi11 1985546 1986142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0299 11 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 43.716 4.01e-38 129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3602 02 82860703 82861305 Glsi11g0299 11 1985546 1986142 CCT
Glsi11g0299 11 1985546 1986142 Glsi11g0299 11 1985546 1986142 ECH
Glsi02g3602 02 82860703 82861305 Glsi11g0299 11 1985546 1986142 ECH