Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0296 ATGCAAGGGAAGAAGCGGGGAAGGGTTCCACTAGAGACTACAACCAAGGGTTCTCAAAGCAATTTCAGCACCCATGCGAATAATGTTGGTCTTGGCCCCTATGGAAAACAGTGTTCGTCTGACGACTCGGAGAGTTTCTACAAGAAACTCAGCGATTTGTTGGAATCCTCTGGACTCACTCTAATTTTTGATGTCCGAGAAACATTGTTGGACTTGTACCTGTTTTACTCGGAGGTGACCAGAAGAGGAGGATATCATCAGATCACTAGAGATAGAAAATGGGACGAAGTAGCTTCTGCCTTAGGGTTGGAAGGCAGCAATGTGAAATTAGCAGCTCAACTTGAAAAGATGTACGCACTTGTTCTTTATCAATTTGAGCAACTATACCACTATAGAAAGCGGAAATCCGAGTCTTTAAGGGATATTACAGGTGGTGAAATGGTGACAAAGATGTGGCCAATGACAGAACAGCAGAAAGTGTTGCTGCTGGAACCCTCCAATGAGAAGCAAGTGAAGAAACGCCGAGGTGCTCCAAGGTCAAGGGGACATAGAAATGCATATCAGATTTTCCTCAAACAGGAATGTGCTCGATTGAGAGCTTGTAATCAGGCCTCCGTCGGTGGCTTAAATCTCCTACACATGGCCATTGATTCATGGAGGAACATGTCCGAGATTGAGAGACAGCCGTATGTGGAGGAAAGCAAGAAGGAGAAGGAAAGATTTATGGAAAAGATTAACACTCAGAATGAGAAGGCAGAGGATAGGCCTGATCTTGATGGGGACTACCATGTCACGGTGCAACCCGACGCAGACAACTACCTCCTAATTGACTACGATGGTGCATCAAAGTAA 852 0.4519 MQGKKRGRVPLETTTKGSQSNFSTHANNVGLGPYGKQCSSDDSESFYKKLSDLLESSGLTLIFDVRETLLDLYLFYSEVTRRGGYHQITRDRKWDEVASALGLEGSNVKLAAQLEKMYALVLYQFEQLYHYRKRKSESLRDITGGEMVTKMWPMTEQQKVLLLEPSNEKQVKKRRGAPRSRGHRNAYQIFLKQECARLRACNQASVGGLNLLHMAIDSWRNMSEIERQPYVEESKKEKERFMEKINTQNEKAEDRPDLDGDYHVTVQPDADNYLLIDYDGASK 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0296 283 Pfam HMG-box domain 178 243 IPR009071 -
Glsi11g0296 283 SUPERFAMILY ARID-like 42 138 IPR036431 GO:0003677
Glsi11g0296 283 SMART bright_3 41 131 IPR001606 GO:0003677
Glsi11g0296 283 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Glsi11g0296 283 Gene3D High mobility group box domain 165 247 IPR036910 -
Glsi11g0296 283 Gene3D - 32 144 IPR036431 GO:0003677
Glsi11g0296 283 SMART ARID_2 37 126 - -
Glsi11g0296 283 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 162 255 - -
Glsi11g0296 283 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 180 249 IPR009071 -
Glsi11g0296 283 SUPERFAMILY HMG-box 165 245 IPR036910 -
Glsi11g0296 283 Coils Coil 231 255 - -
Glsi11g0296 283 MobiDBLite consensus disorder prediction 1 25 - -
Glsi11g0296 283 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0296 44 245 ARID Transcription Factor Family AT1G55650 27.935 1.53e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Glsi11g0296 ARID 4.2e-13 CL0123