Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0291 ATGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAACTTTCTGTAAAGGGTAAAGCGCAAAAAATGAAGTCACAAGCAAATCAAAAGGAAAAGGGTTCATCTTCTAGAAATACAGAATCAGTGGGTGTGGAGACAGCATCAAGAGGAGAAACTTTTCCATTTGATTATGCGCGAAGTACTTCAGGACAATATGATTTCTCAAGAAATAACGATCCTTTCAATCGTATCCATAGTAGTTACACTACTGAAACTGAAGATATTCCGGATGCTGCCTCAGAGAAAGAGCTGGGTAATGAGTACTTCAAGCAGAAGAAGTTTAATGAAGCTATTGACTGCTATTCAAGAAGCATTGCCTTGTCTCCAACAGCTGTAGCATATGCAAACAGAGCAATGGCTTATATCAAACTTAGAAGATTCCTTGAGGCTGAGGAGGACTGTATGGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCTCGTCGAGCAACAGCTAGAAAAGAACTTGGGAAACTTAAAGAATCAATGGAGGATGCTGAGTTTGCTATGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATATAAAGTCTTTGCACGAGAAAGCAATTCTTCAGAAAGCATCCGGTGCTCTGAGAAGTTCTGTACAGGGAACACAGAAAGTGGGAAAGTCAGAGACAAATATCAATGGGGGCAGCATCCATCCTGTTCCAAATGGTACTCAAAAGTCAGGGAACGCTGAAGTTCAAGATCACACAAAGAGTAATGATAAAAAAATTCATGCAAAAGCATCACTCTCGCTGGAGGAAGTAGATAGCAAGGATACAAGAGTTAGAAGCAGGATTGGAGGACAAGAAGTTAATGGTGCCAGTCCAAGCATCAGTGTGGACAGTGTTAAGAGAAATCAAAGAATTAATAAGCAGGAAGTGAAGGCATCTGTTCAACAGCTTGCTTCTCGAGCAGCTTCTCGAGCCATGACTGAAGCTGCCAATAATATAACACCGCCATCTTCAGCTTATCAGTTTGAGGCCTCATGGAGAGGATTTTCAGGTGATTGTGCCCTTCAGGCTCGTCTATTGAAGGCCATATCTCCTCAAGAATTGCCAAAGATATTCAAAAATGCCTTATCTTCTGCGTTACTAATTGACATCGTTAAATGTGTGGCATCCTTTTTCACTGAAGACATGGCTCTGGCTATCAGCTATATAGAGCATTTGACAAAGGTATCAAGATTTGACATGCTCGTAATGTGTCTTCCATCAACAGATAAGGATGATCTCCGCAAGATCTGGGATGAAGTGTTCTGTAGTGAGGCAACTCCAATGGAGTATGCAGAGATTCTAGACAACCTCCGATCCAAATACTGCCAAGGATATTGA 1398 0.4113 MDFQGFLNDLQDWELSVKGKAQKMKSQANQKEKGSSSRNTESVGVETASRGETFPFDYARSTSGQYDFSRNNDPFNRIHSSYTTETEDIPDAASEKELGNEYFKQKKFNEAIDCYSRSIALSPTAVAYANRAMAYIKLRRFLEAEEDCMEALNLDDRYIKAYSRRATARKELGKLKESMEDAEFAMRLEPNNQEIKKQYADIKSLHEKAILQKASGALRSSVQGTQKVGKSETNINGGSIHPVPNGTQKSGNAEVQDHTKSNDKKIHAKASLSLEEVDSKDTRVRSRIGGQEVNGASPSISVDSVKRNQRINKQEVKASVQQLASRAASRAMTEAANNITPPSSAYQFEASWRGFSGDCALQARLLKAISPQELPKIFKNALSSALLIDIVKCVASFFTEDMALAISYIEHLTKVSRFDMLVMCLPSTDKDDLRKIWDEVFCSEATPMEYAEILDNLRSKYCQGY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0291 465 MobiDBLite consensus disorder prediction 292 307 - -
Glsi11g0291 465 MobiDBLite consensus disorder prediction 220 255 - -
Glsi11g0291 465 ProSiteProfiles TPR repeat profile. 159 192 IPR019734 GO:0005515
Glsi11g0291 465 Pfam Tetratricopeptide repeat 96 124 IPR001440 GO:0005515
Glsi11g0291 465 MobiDBLite consensus disorder prediction 19 48 - -
Glsi11g0291 465 SMART tpr_5 126 158 IPR019734 GO:0005515
Glsi11g0291 465 SMART tpr_5 159 192 IPR019734 GO:0005515
Glsi11g0291 465 SMART tpr_5 92 125 IPR019734 GO:0005515
Glsi11g0291 465 MobiDBLite consensus disorder prediction 256 287 - -
Glsi11g0291 465 Pfam Potential Monad-binding region of RPAP3 341 430 IPR025986 -
Glsi11g0291 465 Gene3D Tetratricopeptide repeat domain 78 190 IPR011990 GO:0005515
Glsi11g0291 465 ProSiteProfiles TPR repeat profile. 92 125 IPR019734 GO:0005515
Glsi11g0291 465 Pfam Tetratricopeptide repeat 127 155 IPR019734 GO:0005515
Glsi11g0291 465 MobiDBLite consensus disorder prediction 220 308 - -
Glsi11g0291 465 SUPERFAMILY TPR-like 89 203 IPR011990 GO:0005515
Glsi11g0291 465 PANTHER OS05G0129900 PROTEIN 1 463 - -
Glsi11g0291 465 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0291 Glsi-ChrGlsi11 1946402 1952361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0291 96 162 U-box Gene Family AT3G07370 44.118 2.17e-10 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0291 11 1946402 1952361 Glsi11g0291 11 1946402 1952361 ECH