Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0289 ATGGAATTCCTATTGTTCCCATGCTACTTATGGAGACTGATCCGAACAGTTATTAAATTTGGAAGTCATATGGCTATGCTTTATTGTTATAAAACCATATGTGGTGTCTTCTCCGCAAGAGCTGCATTCGATGAACCTCAGCGAGTAGTTATGGATAATATGTACAGGTTAAAGTCTCCTCGATCTTGTTCAGATGATGCTATTAGAGTTGGCAACGTTTCTGCTACTAATTCTGAAGTGCAGCGTGCGCCGGTGGATGTAACCGAGTCAGATATGTCGGATCGGCTTATCAAGACCCAGATCGCCAATCACCCTCTTTATCCAAATTTAATATCTGCATACATAGAATGTCAAAAGGTTGGAGCTCCACCAGAACTGGCCTCCCTTCTTGAAGAAATAGGCCGGGAAAACCACCCCATTCATGCTCGCCGTGACATAGGGGACGATCCGGAACTTGACGACTTCATGGAATCATACTGCCAAGTTCTTCAAAGATACAAAGAGGAGTTGTCGAAGCCGTTCAACGAGGCGACCTTGTTTTTGTGCAATATCGAATCACAGCTCAGCAACCTTTGCAAGGGAACATTGACAATGTTGTCGGATGGGGCAAGTGGGATTTCAGAGAAGGAATTAAATTATGGGGATGTGGAAGCAGACGTTGAAGGTGACGAATCTTGTGGCACTCGTCCAGGTGATCAAGAGCTTAAAGAAATGCTCCTTCATAAGTACAGTGGCTATCTTAGCAATTTGAGAAAAGAGTTCTTAAAGAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGGGGGGCCCTGTTAGACTGGTGGAACTCCCACAACAGATGGCCTTATCCTACGGAGGAGGAAAAGTTGAAGCTATCAGAATTGACTGGACTCGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGCGGAAACGGCACTGGAAACCATCTGAAGATGTGCGATTTGCTATTATGGATGGCGCAAGTGGTGTTGGCATGGGAGGATCAGTGTTCAATTCTGGAGGAGGACCTCAACGTGATCATTTCTGA 1053 0.4454 MEFLLFPCYLWRLIRTVIKFGSHMAMLYCYKTICGVFSARAAFDEPQRVVMDNMYRLKSPRSCSDDAIRVGNVSATNSEVQRAPVDVTESDMSDRLIKTQIANHPLYPNLISAYIECQKVGAPPELASLLEEIGRENHPIHARRDIGDDPELDDFMESYCQVLQRYKEELSKPFNEATLFLCNIESQLSNLCKGTLTMLSDGASGISEKELNYGDVEADVEGDESCGTRPGDQELKEMLLHKYSGYLSNLRKEFLKKRKKGKLPKDARGALLDWWNSHNRWPYPTEEEKLKLSELTGLDQKQINNWFINQRKRHWKPSEDVRFAIMDGASGVGMGGSVFNSGGGPQRDHF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0289 350 SMART ELK_2 234 255 IPR005539 GO:0003677
Glsi11g0289 350 Pfam KNOX1 domain 97 138 IPR005540 GO:0003677|GO:0005634
Glsi11g0289 350 ProSiteProfiles ELK domain profile. 234 254 IPR005539 GO:0003677
Glsi11g0289 350 Pfam Homeobox KN domain 274 313 IPR008422 GO:0003677|GO:0006355
Glsi11g0289 350 ProSiteProfiles 'Homeobox' domain profile. 254 317 IPR001356 GO:0003677
Glsi11g0289 350 CDD homeodomain 279 318 IPR001356 GO:0003677
Glsi11g0289 350 SMART KNOX2_2 142 193 IPR005541 GO:0003677|GO:0005634
Glsi11g0289 350 Gene3D - 252 324 - -
Glsi11g0289 350 ProSitePatterns 'Homeobox' domain signature. 292 315 IPR017970 GO:0000981|GO:0006355
Glsi11g0289 350 SMART KNOX1_2 95 139 IPR005540 GO:0003677|GO:0005634
Glsi11g0289 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 324 - -
Glsi11g0289 350 Pfam KNOX2 domain 146 192 IPR005541 GO:0003677|GO:0005634
Glsi11g0289 350 SMART HOX_1 256 321 IPR001356 GO:0003677
Glsi11g0289 350 Pfam ELK domain 234 255 IPR005539 GO:0003677
Glsi11g0289 350 SUPERFAMILY Homeodomain-like 256 327 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0289 Glsi-ChrGlsi11 1931606 1937083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0289 33 330 Homeobox Transcription Factor Family AT1G70510 47.923 4.65e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi11g0289 KNOX2 1.2e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0289 11 1931606 1937083 Glsi11g0289 11 1931606 1937083 ECH