Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0281 ATGGCTCACACCGGCAACAATGTCGCTGCGGTCGACAACACGTTCAGGAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGGGAGCGGGAGAGGCAGGAGGAAGAGGCACGATCTAAACCTAAGACTAAAGGTCCTCCAGTGCAGAGGAAACCCTTGAAACATAGAGATTATGAAGTCGACCTTGAATCCCGCTTGGGGAAGACTCAGGTTGTTACTCCAGTTGCACCACTAAGCCAGCAGGCTGGATACTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGATTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTCTGGGAATGTCTATGCGAGTAGAACGTGCTTCTCTTACACAGGTTCAGGAACGATTTGAAGTTCTTAAAAAACGTAAAGCTCTTGGCAGCTTCACAGAGCAAGATCTTGATGATCGAATTTTAAAACAGCAACAAGAAGAGGAAGAAAGAAAGCGACAGCGTCGAGAAAAGAAGAAGGAAAAGAAGAAGGAGAAGGAAGTTGAAGAAGCACCTGAAACAGATCCTGATGTTGCAGCTATGATGGGGTTTGGTGGTTTCCGGTCTTCCAAGAAATGA 612 0.4542 MAHTGNNVAAVDNTFRRKFDREEYLERARERERQEEEARSKPKTKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLTQVQERFEVLKKRKALGSFTEQDLDDRILKQQQEEEERKRQRREKKKEKKKEKEVEEAPETDPDVAAMMGFGGFRSSKK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0281 203 MobiDBLite consensus disorder prediction 26 44 - -
Glsi11g0281 203 MobiDBLite consensus disorder prediction 151 184 - -
Glsi11g0281 203 Coils Coil 21 41 - -
Glsi11g0281 203 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 10 203 IPR040107 GO:0000398|GO:0005681
Glsi11g0281 203 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Glsi11g0281 203 Coils Coil 153 182 - -
Glsi11g0281 203 MobiDBLite consensus disorder prediction 26 57 - -
Glsi11g0281 203 MobiDBLite consensus disorder prediction 151 203 - -
Glsi11g0281 203 SUPERFAMILY beta-beta-alpha zinc fingers 80 121 IPR036236 -
Glsi11g0281 203 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Glsi11g0281 203 Pfam Zinc-finger of C2H2 type 85 109 - -
Glsi11g0281 203 Gene3D Classic Zinc Finger 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0281 Glsi-ChrGlsi11 1877694 1880542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0281 4 147 C2H2 Transcription Factor Family AT3G05760 80.556 8.29e-84 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g0281 zf-C2H2_jaz 1.9e-06 CL0361