Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0276 ATGGAGGAGCTCCGGCCTCGCCTCGACGGAGCGGGTGCCACATTAAACAACGACCTAATGTCTTACGAGCCATCATCTACGATGAGAGACAACTATATGAATAGGAGGGTGAGCGAGTCCGAGACCTGGTGGAATGATCCTGAGGCCAAGAGAAAACGCCGAGTGCTCAAATACAAGCTTTACTCAGCTGAAGGCAAGCTCAAGAAAGCAGAAGTGCGCGGGAAAGCTCGCCGCGGAATCGAAATGGGTAGCAGGAAGGAGCACGATCTGGAGCTGGAGAAAACTCGTTTACTGAGTTTGGCTCTTGATTTCGGCTTCGACCAAGACTCCGCCACCAAATGTTTGGATCGTCTCGTCGCTCTTTACGGTGATGATGGCCGGGATTTTATCACCGTGGAGTACTGTGGTGATGATTTTCTCGCAGCTTTAGCTGATTCAATGCAGGATACTGAGGAATGGGATGATTTACAGGCAATTGAATCAGAAGCTTGTGGAAATTTGGCTAATATTTTTGACAAAAATGTTGTCAAATGTAATTATGAAGATAATGGCATTTCAAGATGCTGCATCAATATTATTGAGGATTCACCTGAACCTCAGAAACGCCAGAAAGTGGTGGAGTTGGATTCAAGTGACGAGGATATGGACTTTGGTATTTCAAAGGAAAAATATGCACCTCAAGGATCTTATTTGAGTGATCATGCGTTTGCAGGTCAACATTCTCCAAAATCTATGGATTGCAGAAGTGGCATCACTCAGGACTCGATTTCTTCAACTTCCAGCAAAATAAAATGTATGTCAGCATCAAAGGATGAAAACAGTGCTCTCACTTTCGAAGAATTACAGGATATAGATAACATTGAAATGGCAAATGTTGTTATATTTGGTAATAGGGCATTTCGACCATTGCAGCGTCAAGCTTGTGAAGCAGCTTTGGCAAAACAAGATTGTTTTATTCTTATGCCTACTGGAGGTGGTAAATCTCTTTGCTATCAGCTTCCGGCAACTCTTCAATCTGGTGCTACAATAGTTGTATCTCCCTTACTTTCACTCATTCAGGACCAGATAATCACGCTGAACCTTAAATTTGGAATACCAGCTACATTTTTAAACTCCCAACAAACGACTTCCCAAGCAGCAGCTGTCCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAGCTCTTATATGTGACACCTGAGAGAATTGTTGGCAACCAATCATTTCTTGAGGTTCTAAAATGCATGCATCGCAAGGGACAGCTAGCGGGTTTTGTTGTTGATGAAGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTAGGATGCCTTAAGCTGAACTTTCCAGATGTACCCGTCATGGCATTGACTGCCACTGCTACCCACTCAGTCCGAGGGGACATCTTAAATGCTTTAAGAATCCCCCATGCGCTTGTTCTTGAAAGAAGCTTTGACAGACCAAACTTGAAGTACGAAGTCATTATTAAGACAAAGGAGTCACTAAAGCAGCTAGGGAAGCTACTAATGGATCGTTTCAAGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTGGAGGTCTCAAAATTTTTGAACGAGAAGTGTAAGATAAAGACGGTGTATTACCATGCTGGCTTGGCTGCCCGCCAAAGAGTTGCTGTTCAAAAGAAATGGCATGAGGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGAATAGACAAGCCTGATGTTCGCTTTGTTATCCACAATACGTTGTCAAAATCAATTGAAAGCTATTATCAGGAATCAGGAAGGGCTGGAAGAGATAATCTGCCTGCAGTTTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGTTAAGAAATGGTCAAGGACATAAAAGGGAAAGTTTTAAGACGGCAATGGCTCAAGCCCAAAAGATGCAACAATATTGTGAATTAAAGGTTGAATGTCGGAGACAAACTTTACTCCAACATTTTGGCGAATCTTTTGACAGAAAAGCCTGCAAATATGGATCTAACCCCTGTGATAACTGTCTCAAGACTGCAACATAA 2106 0.4269 MEELRPRLDGAGATLNNDLMSYEPSSTMRDNYMNRRVSESETWWNDPEAKRKRRVLKYKLYSAEGKLKKAEVRGKARRGIEMGSRKEHDLELEKTRLLSLALDFGFDQDSATKCLDRLVALYGDDGRDFITVEYCGDDFLAALADSMQDTEEWDDLQAIESEACGNLANIFDKNVVKCNYEDNGISRCCINIIEDSPEPQKRQKVVELDSSDEDMDFGISKEKYAPQGSYLSDHAFAGQHSPKSMDCRSGITQDSISSTSSKIKCMSASKDENSALTFEELQDIDNIEMANVVIFGNRAFRPLQRQACEAALAKQDCFILMPTGGGKSLCYQLPATLQSGATIVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTTSQAAAVLQELRKDKPSCKLLYVTPERIVGNQSFLEVLKCMHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKLNFPDVPVMALTATATHSVRGDILNALRIPHALVLERSFDRPNLKYEVIIKTKESLKQLGKLLMDRFKNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMLRNGQGHKRESFKTAMAQAQKMQQYCELKVECRRQTLLQHFGESFDRKACKYGSNPCDNCLKTAT 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0276 701 PANTHER DNA HELICASE RECQ FAMILY MEMBER 280 698 - -
Glsi11g0276 701 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 423 432 IPR002464 -
Glsi11g0276 701 Gene3D - 492 700 IPR027417 -
Glsi11g0276 701 SMART helicmild6 534 616 IPR001650 -
Glsi11g0276 701 MobiDBLite consensus disorder prediction 1 22 - -
Glsi11g0276 701 Pfam Domain of unknown function (DUF3511) 44 69 IPR021899 -
Glsi11g0276 701 Gene3D - 256 491 IPR027417 -
Glsi11g0276 701 Pfam DEAD/DEAH box helicase 302 470 IPR011545 GO:0003676|GO:0005524
Glsi11g0276 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 636 IPR027417 -
Glsi11g0276 701 FunFam ATP-dependent DNA helicase 492 699 - -
Glsi11g0276 701 Pfam Helicase conserved C-terminal domain 508 615 IPR001650 -
Glsi11g0276 701 CDD SF2_C_RecQ 492 625 - -
Glsi11g0276 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 484 IPR014001 -
Glsi11g0276 701 Pfam RecQ zinc-binding 628 697 IPR032284 -
Glsi11g0276 701 SMART ultradead3 296 500 IPR014001 -
Glsi11g0276 701 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 506 656 IPR001650 -
Glsi11g0276 701 CDD DEXHc_RecQ 294 491 - -
Glsi11g0276 701 FunFam ATP-dependent DNA helicase 281 491 - -
Glsi11g0276 701 NCBIfam RecQ family ATP-dependent DNA helicase 294 699 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0276 Glsi-ChrGlsi11 1847750 1854322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0276 425 614 Eukaryotic Initiation Factors Gene Family AT5G11170 25.641 2.10e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0276 11 1847750 1854322 Glsi11g0276 11 1847750 1854322 ECH