Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0272 ATGGCCGGTACTGCAGTCCAACTTAACAATATGAAGTTATCGCGTTTTGTATACGATAAGTTAACACCAGTCACCACCATATACACTTTCACTTTTTCTCCATTTCTCCTTTTCGTTCATTCGGTGACTGCAATTCTTCCTTACTCCATTGCCGTTTTCAATCTTTCTGATCATTTGCTCGCTCTGTATCTGGTTTACTCCTCGGAAATATCATCGCAGGACTTCAGTGAGAACAAGTTCTGTACTGATTGCAAAACCACTAAAACCCCACTCTGGAGAGGAGGACCAGCTGGTCCCAAGACCCTTTGCAACGCCTGTGGGATCAGATACAGGAAGAGAAGGGCTTCTGCGGTGGGATTGAACAGAGGACAAGAGAGGAAAAGAGACAGAGCGCCAAGTTCGGGTGGTGGTGCTGGAAGTGCCATTACCACGACCGCTAGTCCCACCTGTGCCACTACCACTACCTTCGGTAAAACTGTTGGTGTTGGTGGCAGTGATTTGAAGGAGTCTTTGAAAATTAATATAATGGGTTTGGGTGAGGAGGTTTTGTCGCGGCGGACACCCTCAGTTTTGAAGAAACAAAGGTGCCAGAGGAAAAGAAAGCTAGGGGAGGAGGAACAAGCCGCTTTCTGTTTGATGGCATTATCCTGCGGCTTTGTTTTCGCTTAA 669 0.4679 MAGTAVQLNNMKLSRFVYDKLTPVTTIYTFTFSPFLLFVHSVTAILPYSIAVFNLSDHLLALYLVYSSEISSQDFSENKFCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRASAVGLNRGQERKRDRAPSSGGGAGSAITTTASPTCATTTTFGKTVGVGGSDLKESLKINIMGLGEEVLSRRTPSVLKKQRCQRKRKLGEEEQAAFCLMALSCGFVFA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0272 222 MobiDBLite consensus disorder prediction 118 132 - -
Glsi11g0272 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 73 114 - -
Glsi11g0272 222 Pfam GATA zinc finger 81 114 IPR000679 GO:0006355|GO:0043565
Glsi11g0272 222 SMART GATA_3 75 131 IPR000679 GO:0006355|GO:0043565
Glsi11g0272 222 CDD ZnF_GATA 80 128 IPR000679 GO:0006355|GO:0043565
Glsi11g0272 222 Gene3D - 76 135 IPR013088 GO:0006355|GO:0008270
Glsi11g0272 222 MobiDBLite consensus disorder prediction 118 145 - -
Glsi11g0272 222 ProSiteProfiles GATA-type zinc finger domain profile. 75 111 IPR000679 GO:0006355|GO:0043565
Glsi11g0272 222 ProSitePatterns GATA-type zinc finger domain. 81 106 IPR000679 GO:0006355|GO:0043565
Glsi11g0272 222 PANTHER OS01G0976800 PROTEIN 72 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0272 Glsi-ChrGlsi11 1824031 1826622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0272 57 222 C2C2-Gata Transcription Factor Family AT5G49300 40.678 5.39e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi11g0272 GATA 7.3e-17 CL0167