Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0269 ATGGCGACGAGGAATCGCACTTTGCTTTATAGAAAGTACAGAGATGCATTGAAGAGTGTTCGGGTTCCGTCGAGCTCTTCACCGTCGACGAGTTCCGGCGGTCCTGGGGGTCCGGTGATTGAATTGGTCAGTACGTCGCTTCTGAATCCGAATCGTTCTTATGCTCCGCTTAGTACTGAGGATCCTGGTAATTCAAGTAAAGGACCACTTACCGTGGGGCTACCTCCAGCATGGGTGGATTTGTCTGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTAGCCAAGGCTCATGCAAAGGCTTTAATGCCATCATTTGGAGATGGTAAGGAGGATCAACGAGCTATCGAGACTCTAACACATGAGATAACTGACTTAATAAAGAGATCAGAGAGGAGACTGCAGAGACTTTCTGCTACTGGGCCTTCCGAGGATTCCAACGTGAGGAAAAATGTGCAGCGTTCTCTGGCTACTGACCTTCAGAACCTCTCTGTAGAGCTCCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGACAGCAAAAAGAGGGTCAAGATGAGATGGATCTAGAAATGAACATAAATGGAAGTAAATCCAGATTTGAAGATGATGCCTTGGACAATATGGTATTTAATGAGCATCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTCACTGTAGAAAGAGAAAAAGAGATCCAACAGGCAAGCGCAAGTTCCTTATTCGCTGTTGTGGAATCTGTAAACGAGCTCGCTCAGATTATGAAGGATTTATCTGTACTAGTAATAGATCAGGGGACCATTGTTGACAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCTGAGAGGACACAAAAAAAAGGGGGCATGGTAATGTGTGCTACAGTGCTTGTTATCATGTGCTTCATTATGTTGGTTCTCTTATTTCTTAAGGAAATAATTTTGTGA 999 0.4404 MATRNRTLLYRKYRDALKSVRVPSSSSPSTSSGGPGGPVIELVSTSLLNPNRSYAPLSTEDPGNSSKGPLTVGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQRAIETLTHEITDLIKRSERRLQRLSATGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDEMDLEMNINGSKSRFEDDALDNMVFNEHQMAKLKKSEAFTVEREKEIQQASASSLFAVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFIMLVLLFLKEIIL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0269 332 PANTHER SYNTAXIN 82 317 IPR045242 -
Glsi11g0269 332 SMART tSNARE_6 231 298 IPR000727 -
Glsi11g0269 332 SMART SynN_4 69 184 IPR006011 GO:0016020
Glsi11g0269 332 FunFam Syntaxin-43 75 290 - -
Glsi11g0269 332 Gene3D - 75 290 - -
Glsi11g0269 332 Pfam SNARE domain 272 324 IPR000727 -
Glsi11g0269 332 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 236 298 IPR000727 -
Glsi11g0269 332 CDD SNARE_syntaxin16 233 297 - -
Glsi11g0269 332 MobiDBLite consensus disorder prediction 44 66 - -
Glsi11g0269 332 Coils Coil 82 102 - -
Glsi11g0269 332 MobiDBLite consensus disorder prediction 20 34 - -
Glsi11g0269 332 MobiDBLite consensus disorder prediction 20 71 - -
Glsi11g0269 332 SUPERFAMILY t-snare proteins 74 291 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0269 Glsi-ChrGlsi11 1811057 1814575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0269 1 332 SNARE and Associated Proteins AT5G26980 76.877 0.0 507
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0269 11 1811057 1814575 Glsi11g0269 11 1811057 1814575 ECH
Glsi02g3388 02 81412351 81416307 Glsi11g0269 11 1811057 1814575 ECH