Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0258 ATGGCCTTAGTGAATTTCTTATTCATTCTCATCCTTTTACCTTCATTTGAGGCCCTCTTAGATGAAAAACCCTCAGACATTAAGAACCAAGACATGCATGCCTTGATTGCACAAGTGTGCATGGATGTTGAAAACCAAAACTCATGCCTCACCAATGTTCAAAATGAGCTCGTTAAGGCGGGCCCTCCAAGCCCCGCTTCGGTTGTAAGCGCCGCGCTCAGGGCCACTCTCAATGAAGCCAGAGGTGCCATTGACAAAATAACAAAGTTCAGCACTTTTTCCATTAGTTACCGCGAGCAAGTAGCCTTACAAGACTGCAAGGAGCTCCTAGATTTCTCTGTGTCGGAGCTGGCCTGGTCATTAGGTGAGATGAGGAGAATCCGAGGAGGCGATAAGAGCGTGGAATACGAGGGAAACCTGGAAGCTTGGCTGAGTGCAGCGCTGAGCAACCAAGACACATGCCTTGAAGGGTTTGAGGGCACTGACAGGCGTCTTGAGAGTTACGTCAGCGGAAGCTTGACGCAAGTCACACAGCTTATCAGTAATGTCTTAGCTTTGTATACTCAATTGCATAGCTTACCCTTTAGACCCCCAAGAAATAAAACCCTCTCAAATGAACAAAGCTTGGAGTTTCCCGAATGGATGACGCAGGGTGACCAAGAACTTCTCAAATCTAGGCCACGAGGAGTACATGCAGACGCGGTTGTGGCACTGGATGGGAGTGGCCACTATCATACCATCACAGAAGCAGTTAATGCAGCTCCAAGGCAAAGCAACAGGAGGTATGTTATCTACATCAGAAAGGGAATTTATGAGGAGAATGTTGACGTGAAGAGGAAGACGACCAACATAATTTTCGTGGGAGATGGTATTGGGCGGACCATAGTCACAGGCAACCGCAATTTCATGCAAGGATGGACTACCTTCCGAACTGCCACAGTTGCTGTATCAGGGAAGGGTTTCATTGCGAGGGACATGACATTTAGGAACACGGCTGGGCCAGAAAACCATCAAGCAGTGGCACTGCGCGTGGATTCAGACCAATCTGCCTTCTACAGGTGCAGCATAGAAGGCCACCAGGACACCCTTTACGCCCACTCGCTGCGTCAATTCTACAGGGAATGCGACATCTATGGCACCATAGACTTCATATTTGGCAATGGAGCAGCGGTGCTACAAAATTGCAGGTTATTCACCAGAGTGCCACTACCATTGCAGAAGGTTACCATCACAGCCCAAGGCAGGAAAAGCCCACATCAGAGCACTGGGTTTTCAATCCAGGACAGCTATGTCTTGGCTACCCAACCTACCTATTTGGGGAGGCCATGGAAGCAGTACTCTAGGACAGTTTATATGAACACGTACATGAGTGGGCTAGTCCAGCCCAGAGGTTGGCTCGAGTGGTTTGGCAACTTTGCCTTGAACACGTTGTGGTACGGTGAGTATAGAAATTTTGGGCCCGGTGCGTCGCCAGCTGGAAGGGTCAAATGGCCTGGTTATCACATTATAAAAGATGCTGCTACCGCCAATTTCTTCTCGGTTCAGCGCTTCATTGACGGCGGATCATGGCTGCCCGGAACAGGTATCAGGTTTACAGCAGGTTTGACCAATTAG 1614 0.4907 MALVNFLFILILLPSFEALLDEKPSDIKNQDMHALIAQVCMDVENQNSCLTNVQNELVKAGPPSPASVVSAALRATLNEARGAIDKITKFSTFSISYREQVALQDCKELLDFSVSELAWSLGEMRRIRGGDKSVEYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYVSGSLTQVTQLISNVLALYTQLHSLPFRPPRNKTLSNEQSLEFPEWMTQGDQELLKSRPRGVHADAVVALDGSGHYHTITEAVNAAPRQSNRRYVIYIRKGIYEENVDVKRKTTNIIFVGDGIGRTIVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFYRCSIEGHQDTLYAHSLRQFYRECDIYGTIDFIFGNGAAVLQNCRLFTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLATQPTYLGRPWKQYSRTVYMNTYMSGLVQPRGWLEWFGNFALNTLWYGEYRNFGPGASPAGRVKWPGYHIIKDAATANFFSVQRFIDGGSWLPGTGIRFTAGLTN 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0258 537 PANTHER PECTINESTERASE 16 525 - -
Glsi11g0258 537 Pfam Pectinesterase 233 520 IPR000070 GO:0030599|GO:0042545
Glsi11g0258 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 191 IPR035513 -
Glsi11g0258 537 SUPERFAMILY Pectin lyase-like 230 534 IPR011050 -
Glsi11g0258 537 SMART PMEI_2 31 186 IPR006501 GO:0004857
Glsi11g0258 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 191 IPR035513 -
Glsi11g0258 537 FunFam Pectinesterase 227 535 - -
Glsi11g0258 537 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
Glsi11g0258 537 FunFam Pectinesterase 33 192 - -
Glsi11g0258 537 NCBIfam pectinesterase inhibitor domain 6 191 IPR006501 GO:0004857
Glsi11g0258 537 Pfam Plant invertase/pectin methylesterase inhibitor 35 186 IPR006501 GO:0004857
Glsi11g0258 537 Gene3D - 228 535 IPR012334 -
Glsi11g0258 537 CDD PMEI-like_4 49 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0258 Glsi-ChrGlsi11 1750183 1751870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0258 1 537 Carbohydrate Esterase AT3G05620 60.870 0.0 696