Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0257 ATGGCCATTTTCAAGTTCTCCATAAGCTTATTATGCAATATTGTCTTTCTTTTGTTGATTTCCCCCAGTTATGCGTCTCTAGCAACCTCGTCTTCCTCCATAGATACCATTTGCGACGCCACACCTTACCCCTCATTTTGCAAATCGAAATCACCTTCTGGTGACCAAGTTGATATACATGACTATGGACGGTTTTTCACAAACATATCATTGTCGTCATCGGGGAGGTTTGTTTCGTATGTCCTCAATCTCCTTCAATCTAGGTCTCAACTTTCCAACTCCACCGTGCGCGCCCTTCAAGATTGCTACCTTTTAGCTGACCTGAATGTAGATTTCTGGTCCAACACTCTACAAAACATCAATTTCACCAACACCCTAAGTAGCTCAACGCAGGCTGAAGATCTGGAAACCTTGATTAGTGCTACTCTAACCAACTATGAAACCTGCTTAGACGGCCTTGGACAAGCAACATCCAGCCCTGACAGTGACCTAGTAAGCCTTATTTCCAATGGGACAATGTTTTCCGGCATTTCCCTTTCCCTATTTAGACTTGGCTGGGCTATGAACACCACCAACACAAGCAAAGAGGAACAAAGGGTATACGAGCTTATCAGTGGCAGTGGACGAAAGCTGCTGCAGTCGAGTCCTGACAATGTTTCAGTGAGCCAAAAGGTGGTGGTGAACCCAGATGGCTCGGGAAACTACACCAGCATCAACGACGCCGTAAATGCAGCCCCAAACAACACTGATGGTAGCAATGGGTTCTTCCTCATTTACGTGGTGGCGGGAGTGTACGAGGAGTATGTCTCTATTCCCAAAAATAAAAAGTACTTGATGATGATAGGAGATGGTATCAACCAAACTGTGATCACGGGTAATCGCAGCGTGGTTGATGGCTGGACTACTTTCAACTCCGCCACATTCGCGGTGGTTGGGCAAGGGTTTGTGGCAGTGAACATAACATTTCGTAACACAGCTGGAGCAATCAAACATCAAGCAGTAGCCCTGAGAAGCGGAGCAGATTTATCAGCGTTTTATAGCTGTAGCTTTGAAGGGTACCAAGACACCTTGTACACACATTCTCTGAGACAGTTTTATAGGAATTGTGACATTTACGGAACAGTGGACTTCATATTTGGTAATGCAGCGGTTGTTCTCCAAGACTGTAACATCTACCCCAGACTTCCATTGCAAGGTCAATACAACGCCATTACAGCGCAGGGCCGAACTGACATTAACCAGAACACAGGCACCTCCATACACAATTGTAGCATCAGTGCGGCCTCTGACTTAGCTGCTAGCGATGGCACCACAAAAACGTATCTAGGGAGGCCATGGAAGCAGTATTCACGGACTGTTTATATGCAGTCTTTCATGGACACATTAATTGATCCAGCGGGTTGGGTAGAGTGGTCAGGGGACTTCGCCTTGGACACCCTTTATTATGCCGAATATGATAATTGGGGGCCAGGATCCAACACTAGTTCTAGGGTTACTTGGCCCGGATACCATGTCATTAATGACACCGATGCTCTTAATTTCACTGTCTCCCAGTTCATACAAAGTGATGCTTGGCTACCAGCCACCGGCGTCCCTTTCTTTGCTGATTTACTTTGA 1617 0.4613 MAIFKFSISLLCNIVFLLLISPSYASLATSSSSIDTICDATPYPSFCKSKSPSGDQVDIHDYGRFFTNISLSSSGRFVSYVLNLLQSRSQLSNSTVRALQDCYLLADLNVDFWSNTLQNINFTNTLSSSTQAEDLETLISATLTNYETCLDGLGQATSSPDSDLVSLISNGTMFSGISLSLFRLGWAMNTTNTSKEEQRVYELISGSGRKLLQSSPDNVSVSQKVVVNPDGSGNYTSINDAVNAAPNNTDGSNGFFLIYVVAGVYEEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQGFVAVNITFRNTAGAIKHQAVALRSGADLSAFYSCSFEGYQDTLYTHSLRQFYRNCDIYGTVDFIFGNAAVVLQDCNIYPRLPLQGQYNAITAQGRTDINQNTGTSIHNCSISAASDLAASDGTTKTYLGRPWKQYSRTVYMQSFMDTLIDPAGWVEWSGDFALDTLYYAEYDNWGPGSNTSSRVTWPGYHVINDTDALNFTVSQFIQSDAWLPATGVPFFADLL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0257 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 184 IPR035513 -
Glsi11g0257 538 Pfam Pectinesterase 225 523 IPR000070 GO:0030599|GO:0042545
Glsi11g0257 538 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Glsi11g0257 538 PANTHER PECTINESTERASE 19 527 - -
Glsi11g0257 538 FunFam Pectinesterase 218 537 - -
Glsi11g0257 538 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857
Glsi11g0257 538 Gene3D - 218 537 IPR012334 -
Glsi11g0257 538 SUPERFAMILY Pectin lyase-like 224 535 IPR011050 -
Glsi11g0257 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 184 IPR035513 -
Glsi11g0257 538 SMART PMEI_2 29 181 IPR006501 GO:0004857
Glsi11g0257 538 NCBIfam pectinesterase inhibitor domain 5 182 IPR006501 GO:0004857
Glsi11g0257 538 CDD PMEI-like_3 36 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0257 Glsi-ChrGlsi11 1746273 1747993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0257 6 538 Carbohydrate Esterase AT4G02330 55.806 0.0 595