Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0256 ATGCCCGGGACAGATGACCAGAGGAGGAAGAGATTGGCCATTATCGGGGTCTCCACCTTCTTACTGGTGGCTGTGGTGGTCGCTGTCACGGTTGGTGTGAGCCTCAAAGACAACGACTCCTCCAATCCCAAGGATAGCAACAAGTCGCACGTGTCTTCCTCAGAAAAAGCGGTGAAAAGCATATGCCAACCCACGGATTACAAAAAAGAATGCGAGCAGAGCCTCAACGCAGAGGCAGGAAACACCACTGACCCAAGAGAACTCATCAAGACTGCCTTCAACATAGCCATTAGGAAAATCGAGGGCGGACTCAAGCAATCCAAGTTGTTGCACGAGATCGAGAAGGATCCCAGAGCAAAGTTGGCTCTTAGAACTTGCAGGCACCTCATGACTCTTTCCATTGAGGAGTTCAAAAGGTCCCTTAATAATTTTGGTGGCTTTGATCTTACGAGTGTGGACCGGATACTCATGAACTTGAAGGTTTGGCTCAGCGGTGCCATCACATACCAAGAGACTTGCCTGGATGGCTTCCAGAACACCTCCAGCGAAGCAGGTCAAAGGATGAAGGACGCATTGCGAGCTTCCATGCACATGAGCAGCAACGGCCTTGCCATCATCACCGATATGGCCAGAGGTTTCTCAATTTTGAATATCACCAAACAAGGCGGACGACGCCTGCTTGGAGAAGAAGAAGAAGACGGGGAGCTCGATCTTCCCGCCTGGGTTGAAGAGGGTATGAATGGTGCTCGCAGACTGCTCGCAAACAAAGGCAATCTCAAGGCTGATGCAGTGGTTACCAAAGATGGGCGGGGTGGAACATTCAAGAGCATCAAGAGTGCATTAAAGAAGGTCCCAAAGAACAACAAAAAGACATTCATCATCGTAATCAGGGAGGGTGTTTACCGGGAGCATGTTCGAGTCACGAGGCAAATGACCAACGTCGTGTTCATCGGAGAAGGTGAGAACAAGACACGCATCACTGGCAGCAGAAACTTCGTGAATGGGGTTAATACCTATAATACAGCCACTGTAGCTATAGAAGGAGATTACTTCACGGCCATCAATATGGGGTTTGAGAACTCTGCTGGTCCCCAGAAACATCAAGCAGTTGCCTTGAGGGTGCAAGGTGACAAGGCCATCTTCTTTCGATGCAAGATGGATGGCTATCAAGACACACTTTATGTCCACGCCTTGCGTCAATTCTACAAGGAGTGCACCATTTCTGGCACTATCGACTTCGTGTTCGGAGACGCACTTGCGGTTTTCCAGAACTGCACTTTTGTGGTGAGAAAGCCAATGGATAACCAGCAATGCATTGTGACCGCTCAAGGAAGGAAGGAGAAGCACCAACCATCCGGAATAATCATACATGGTAGCTCCATTGTATCAGACCCCGACTACTATCCAGTGAGGAACACCATCAAATCTTACCTTGCCCGTCCATGGAAACCTTACTCAAGGACCGTCTTTTTGGAGACCTTCATTGATGACTTGATCCAACCTACTGGCTATCTGCCGTGGGAAAAAGATGTTGGCCTCAGCACTTGCTTCTACAGTGAATACAACAACCGCGGCCCAGGTTCTGACAAATCCAAGCGCGTTAAATGGCGTGGCATCAAAAATATCACTGCACAAAATGCTGCTGAGTTTACACCATCAGGTTTCTTTAAGACAGATGACTGGATTAAGGTTACTAGATTACCTTACACTCCTGGCTTCTTTTCCCCCAAGTGA 1734 0.4862 MPGTDDQRRKRLAIIGVSTFLLVAVVVAVTVGVSLKDNDSSNPKDSNKSHVSSSEKAVKSICQPTDYKKECEQSLNAEAGNTTDPRELIKTAFNIAIRKIEGGLKQSKLLHEIEKDPRAKLALRTCRHLMTLSIEEFKRSLNNFGGFDLTSVDRILMNLKVWLSGAITYQETCLDGFQNTSSEAGQRMKDALRASMHMSSNGLAIITDMARGFSILNITKQGGRRLLGEEEEDGELDLPAWVEEGMNGARRLLANKGNLKADAVVTKDGRGGTFKSIKSALKKVPKNNKKTFIIVIREGVYREHVRVTRQMTNVVFIGEGENKTRITGSRNFVNGVNTYNTATVAIEGDYFTAINMGFENSAGPQKHQAVALRVQGDKAIFFRCKMDGYQDTLYVHALRQFYKECTISGTIDFVFGDALAVFQNCTFVVRKPMDNQQCIVTAQGRKEKHQPSGIIIHGSSIVSDPDYYPVRNTIKSYLARPWKPYSRTVFLETFIDDLIQPTGYLPWEKDVGLSTCFYSEYNNRGPGSDKSKRVKWRGIKNITAQNAAEFTPSGFFKTDDWIKVTRLPYTPGFFSPK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0256 577 FunFam Pectinesterase 256 573 - -
Glsi11g0256 577 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Glsi11g0256 577 CDD PMEI-like_3 60 211 - -
Glsi11g0256 577 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Glsi11g0256 577 SMART PMEI_2 53 205 IPR006501 GO:0004857
Glsi11g0256 577 Pfam Pectinesterase 262 558 IPR000070 GO:0030599|GO:0042545
Glsi11g0256 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 209 IPR035513 -
Glsi11g0256 577 Gene3D - 256 573 IPR012334 -
Glsi11g0256 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 211 IPR035513 -
Glsi11g0256 577 SUPERFAMILY Pectin lyase-like 260 572 IPR011050 -
Glsi11g0256 577 MobiDBLite consensus disorder prediction 37 57 - -
Glsi11g0256 577 FunFam Pectinesterase 54 210 - -
Glsi11g0256 577 PANTHER PECTINESTERASE 19 563 - -
Glsi11g0256 577 NCBIfam pectinesterase inhibitor domain 43 208 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0256 Glsi-ChrGlsi11 1743022 1744755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0256 3 575 Carbohydrate Esterase AT3G05610 47.478 0.0 589