Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0250 ATGGATATGGAGAGATCCTGTTGTACACACAACCTAGAAATATGTGATGGGAAGAAAGAATTGAGGCGGCTCTGGCCACAGTTATATTTATTGCTCAAAATTCCTAATGAAACTCATCCAATATTGATACGGCTAGTTTTCACTATTAAATTCATGGGAGATGTGGAAATGGTATTAGTAATTGATGAAAACAAAGGAGAGAAAGAAATATCAGATTTCAAGGAAATTAGATTGCAGGCGCAAAGAAATCAGGGAAGGGTGATGTTTCACCAATCTAGTTCTGAAGCTAAATTTTATCACAACTGAAACGCCTATAAGGCATCAGGCATCAGGGACCAGGTACCAAATTTTGCAGACCCCGCTTCGCTTCCCTCAGTTTCTGCTCAGGTCGATTCTCTTTTGGACGAACTGGCAAGTAAAATGAGTAGACTATCAAGTCGCACTATTTATGTTGGTAATCTTCCCGGTGATATTCGATTGAGAGAAGTAGAAGATCTTTTCTACAAGTATGGTCCCATCGTTGACGTTGATTTGAAAATCCCTCCAAGACCACCAGGTTATGCTTTTGTGGAGTTTGAGGATCCTCAAGATGCTGAAGATGCTATTCACTATCGAGATGGTTATAATTTTGATGGTTTTCGATTACGAGTTGAATTTGCACATGGTGGTCGGGGATATTCGTCATCAGTAGACCGATATAGTAGTTATAGTGGTGGTGGTAGTAGCCATGGATTTTCCAAGCATTCTGACTATCGTGTTCTCGTCACTGGATTACCCCCATCGGCTTCATGGCAAGACTTAAAGGATCACATGCGTAAAGCTGGTGATGTATGCTTCTCTCAAGTTTTCCGTGAGCGTGGTGGCATGACTGGGATAGTGGATTATACTAATTATGATGATATGAAATATGCTGTAAGGAAACTTGATGACTCTGAATTCCGGAATTCCTTTTCTCGGGCTTACATAAGGGTGAGGGAATATGATCGACGGAGTTATTCTAGGAGTCCCAGTCATGATTCAAGGAGGAGCTATTCTACTAGTCATAGCCGCAGTCCTTATACATCACGAAGTCGAAGCCGCAGTTGGAGTCATAGCTATAGTGGCAGGAGCAGAAGTTTGTCTCCAAAGGCAAAACGCTCACGACATTCAGTATCTCTTTCAAGATCTCGCTCAAGATCCAGATCTCCAAATTCATCTCTTCCACCTCACAGAAGTCGCAGTCCTAGAAGCTTGTCACGATCTTGTTCGCCTTCGGTGAGGTCTGAACGCAGCAGATCTGTTGACTCGGGAAATCGCTATTGA 1302 0.4247 MDMERSCCTHNLEICDGKKELRRLWPQLYLLLKIPNETHPILIRLVFTIKFMGDVEMVLVIDENKGEKEISDFKEIRLQAQRNQGRVMFHQSSSEAKFYHNXNAYKASGIRDQVPNFADPASLPSVSAQVDSLLDELASKMSRLSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDVDLKIPPRPPGYAFVEFEDPQDAEDAIHYRDGYNFDGFRLRVEFAHGGRGYSSSVDRYSSYSGGGSSHGFSKHSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAVRKLDDSEFRNSFSRAYIRVREYDRRSYSRSPSHDSRRSYSTSHSRSPYTSRSRSRSWSHSYSGRSRSLSPKAKRSRHSVSLSRSRSRSRSPNSSLPPHRSRSPRSLSRSCSPSVRSERSRSVDSGNRY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0250 433 CDD RRM2_SF2_plant_like 251 326 - -
Glsi11g0250 433 MobiDBLite consensus disorder prediction 389 424 - -
Glsi11g0250 433 CDD RRM1_SF2_plant_like 148 218 - -
Glsi11g0250 433 Gene3D - 134 250 IPR012677 -
Glsi11g0250 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 329 IPR000504 GO:0003723
Glsi11g0250 433 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 82 413 - -
Glsi11g0250 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 222 IPR000504 GO:0003723
Glsi11g0250 433 MobiDBLite consensus disorder prediction 346 373 - -
Glsi11g0250 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 316 IPR000504 GO:0003723
Glsi11g0250 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 216 IPR000504 GO:0003723
Glsi11g0250 433 SUPERFAMILY RNA-binding domain, RBD 146 319 IPR035979 GO:0003676
Glsi11g0250 433 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 141 250 - -
Glsi11g0250 433 FunFam serine/arginine-rich splicing factor SR34A-like 251 328 - -
Glsi11g0250 433 SMART rrm1_1 252 321 IPR000504 GO:0003723
Glsi11g0250 433 SMART rrm1_1 148 218 IPR000504 GO:0003723
Glsi11g0250 433 MobiDBLite consensus disorder prediction 374 388 - -
Glsi11g0250 433 Gene3D - 251 328 IPR012677 -
Glsi11g0250 433 MobiDBLite consensus disorder prediction 332 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0250 Glsi-ChrGlsi11 1689563 1699261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0250 143 220 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 2.09e-06 47.4