Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0236 ATGGATGCCATCAGGAACAAGTTGGAGACCTTTATCTACATCATCAATGAAGTTTATGAGAAGAGTGGTGGAAGCTCCTCTAGCTTCCAAGATGAAGAACAGTTTTTACTCATGCATCACCATTTACAAGTAAAGGAAAAATTGAAGTTGAGTTCTTTTCTGATGACTTCGCTTCGAAACGTCTCTTTTACCATTCGTGATGACGAGCGGTTCAAAGCAGTTGGATGGAATGCCATGGATGGCAAGAACATATCTTCCGATCAGGTCATTGCAGAAATGCTTCAAATGGGGTTTGAATATTCCAATATCGTGGAGGCTGTAAAAGCAGTGGGTCCATCTATTAATAGTGCTGTGGAGTTTATCCTGAATAGTGCTGGTAGAAATAGCGTTAGAGCATCTACTGCTAATAGCTCCAAAACTTATATGGGCAATGGGAAGGGTCTCAGAAAAAGAGACTTGCCCTCGTCACATTCTTTAAGTCAAGTTCAACAGTCTAGCATACTGGACCATTTCCAACCCACCGATAAATCCACAGAGAGAAAGAAAAATATTGTAGTTGGTGTACCATTTTCTAGGTTGGAAGTTTTTCCAGGCATTGTGGAAGAGCACAAGGAGCCTTTCCTTGACACGAATGTTGCTCCCATAATGCAGTCAGGATCCTCTGTGGTTAATGCCGTGGAAGAATTGGAAATCGCATCAGATTGGGAGCAGAAAGTTAGCAATCTCTTGCAAAAGCATTTTGGATTTTCATCATTAAAGAGTTTTCAAAGGGAAGCCCTGACTGCTTGGGTAGCTCATAAAGACTGTCTTGTCCTGGCTGCAACAGGATCTGGAAAATCTCTGTGCTTTCAGATTCCTGCACTGTTATCTGGGAAGGTGGTGGTTGTGATCTCACCCTTGATAAGCCTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGGATCAGTGCTTGCTTTCTTGGGTCTGGGCAGGCTGACAATACTGTTGAACAGAAAGCAATGAGAGGCATGTATAGTATAATATATGTTTGCCCAGAGACAGTCTTAAGATTGATTAAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCTTTATTTGCAATTGATGAGGTACATTGTGTTTCTAAATGGGGTCATGATTTCCGGCCAGACTACAGACGACTGTCTGCATTGAGGGAAAATTTCAGTACTAGCAAGCTAGAATTCCTGAAATTTGATGTACCTCTGATGGCTTTGACAGCTACAGCTACGAACCGGGTTCGTGAGGATATCTTAAAGTCACTATGCATGCCAAGAGAAACAAAGATTGTTCTTACCTCATTTTTTCGATCTAATTTACGATTTTTGGTAAAGCATAGTAGGACATCATTGTCTTATTTTGAGAAAGATTTTCGCGAATTAATTAAACTATATGGAAGAAAGCAGAAGACAGATAAAAGGAAAAAGGCTTTTATATCAAAGGAATTACAAAAAGTTTCCAATTGCTCCAATGCTAGCAGAATCTCTGAGACAGACAGTGTTTTTCCTTATGCTTTGGATGATAACCAAGATGATTACATTGAAGAGGATATGAGTGAAACATGCTCAGAAAACACAAATGGTTTTGTAAAGGGAAAGGAATTGTCAGTTGAGTACTTGGAGAATGGCATTGACATCTTTAAAAGTGTGGATGACTGGGATGTTGCCTGTGGTGAATTCTGTGGAATACCTCCTTGTAGGGAATGGGAGTTATCTGAGGCTATTGATCTACTTAAGGAACCAGAAGAAAGACAGAGACTTCTTAAAGAGCCTTTAGAGCAAGGACCAACTATCATATATGTGCCCACTAGAAAAGAAACACTGAGAATTGCAAAGTATCTATGTGAGTTTGGTGTGAAGGCTGCTGCTTATAATGCATCGCTGCCAAAATCACATCTAAGAAGGGTGCACAAAGAGTTTCATGAAAACACATTAGAGGTTGTTGTTGCAACAGTAGCTTTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATTCACTACGGTTGGCCTCAGAGTTTAGAAGCCTACTACCAAGAAGCTGGTCGGGCTGGACGAGATGGGAAATTAGCAGAATGCATTCTTTATGCAAACTTAGCAAGAGTACCATCACTTTTGCCAAGTCATAGAAGTGAAGATCAGTTAAAACAAGCATTTATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTAGAGCGAAGACACTTGTGGAGTACTTTGGAGAGGATTTCAGTAATCAGAAGTGTTTCTTATGTGATGTGTGTGTTGATGGACCACCTCAATTGCAGAATCTAAAAGAGGAGGCATGTATTTTGCTACAAGCTGTAGCTTCACATTATGGACGAAGTTGTGTCATGGATTGCCTATATGAAGATGATACACACCTTGACACAGAAGAAAGAAGACTTCGGGAGAGGCCAAGTCTTAATGTGTTTGTTAGGAAGATAAGGGAGCAGTCTCAAAATTTTTTGACCACTGATATGTTATGGTGGAGAGGTCTTGCTCGTGTTATGGAAGTTAAAGGATACATCAGGGAGGGAGATGACAAGACCCATGTTCAGATAAAATACCTGGAGCCAACAGAAGTGGGACTGAAATTCATGAAGTCCACTAGTGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGCTGCTTGCAATGAAAAATTGCAAATCATATTCCTCGTTCTCGGATTGGGGAAAAGGCTGGGCAGATCCTGAGATTCGTCGCCAGCGGCTGGAAGGAATGCAACTTGACAGAAAGCCATGGATGCGGCAAAGTCCTAGAAAATCACGAAAGAGAAAAGCTAATAAAGTGAAGCCTGATCGAAGGACTTCTCGAGGGAGACTAGCTGCAAAACTCTCAAAGCATGTGTGA 2919 0.4097 MDAIRNKLETFIYIINEVYEKSGGSSSSFQDEEQFLLMHHHLQVKEKLKLSSFLMTSLRNVSFTIRDDERFKAVGWNAMDGKNISSDQVIAEMLQMGFEYSNIVEAVKAVGPSINSAVEFILNSAGRNSVRASTANSSKTYMGNGKGLRKRDLPSSHSLSQVQQSSILDHFQPTDKSTERKKNIVVGVPFSRLEVFPGIVEEHKEPFLDTNVAPIMQSGSSVVNAVEELEIASDWEQKVSNLLQKHFGFSSLKSFQREALTAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLARHGISACFLGSGQADNTVEQKAMRGMYSIIYVCPETVLRLIKPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSTSKLEFLKFDVPLMALTATATNRVREDILKSLCMPRETKIVLTSFFRSNLRFLVKHSRTSLSYFEKDFRELIKLYGRKQKTDKRKKAFISKELQKVSNCSNASRISETDSVFPYALDDNQDDYIEEDMSETCSENTNGFVKGKELSVEYLENGIDIFKSVDDWDVACGEFCGIPPCREWELSEAIDLLKEPEERQRLLKEPLEQGPTIIYVPTRKETLRIAKYLCEFGVKAAAYNASLPKSHLRRVHKEFHENTLEVVVATVAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLAECILYANLARVPSLLPSHRSEDQLKQAFIMLSDCFRYGMNTSCCRAKTLVEYFGEDFSNQKCFLCDVCVDGPPQLQNLKEEACILLQAVASHYGRSCVMDCLYEDDTHLDTEERRLRERPSLNVFVRKIREQSQNFLTTDMLWWRGLARVMEVKGYIREGDDKTHVQIKYLEPTEVGLKFMKSTSEQAFYVYPEADMLLAMKNCKSYSSFSDWGKGWADPEIRRQRLEGMQLDRKPWMRQSPRKSRKRKANKVKPDRRTSRGRLAAKLSKHV 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0236 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 707 IPR027417 -
Glsi11g0236 972 MobiDBLite consensus disorder prediction 929 972 - -
Glsi11g0236 972 SUPERFAMILY UBA-like 86 124 IPR009060 GO:0005515
Glsi11g0236 972 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 581 736 IPR001650 -
Glsi11g0236 972 SMART ultradead3 248 453 IPR014001 -
Glsi11g0236 972 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 83 124 IPR015940 -
Glsi11g0236 972 MobiDBLite consensus disorder prediction 132 164 - -
Glsi11g0236 972 Pfam DEAD/DEAH box helicase 255 422 IPR011545 GO:0003676|GO:0005524
Glsi11g0236 972 SMART helicmild6 616 697 IPR001650 -
Glsi11g0236 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 318 IPR027417 -
Glsi11g0236 972 MobiDBLite consensus disorder prediction 940 956 - -
Glsi11g0236 972 FunFam ATP-dependent DNA helicase 708 886 - -
Glsi11g0236 972 FunFam ATP-dependent DNA helicase 221 444 - -
Glsi11g0236 972 Pfam Helicase conserved C-terminal domain 594 696 IPR001650 -
Glsi11g0236 972 NCBIfam RecQ family ATP-dependent DNA helicase 242 471 IPR004589 GO:0004386|GO:0006310
Glsi11g0236 972 Gene3D - 216 444 IPR027417 -
Glsi11g0236 972 FunFam ATP-dependent DNA helicase 581 706 - -
Glsi11g0236 972 CDD DEXHc_RecQ 243 443 - -
Glsi11g0236 972 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 436 IPR014001 -
Glsi11g0236 972 Gene3D - 581 706 IPR027417 -
Glsi11g0236 972 Gene3D - 712 892 IPR036388 -
Glsi11g0236 972 PANTHER DNA HELICASE RECQ FAMILY MEMBER 230 815 - -
Glsi11g0236 972 Pfam RecQ zinc-binding 717 768 IPR032284 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0236 Glsi-ChrGlsi11 1587395 1595866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0236 586 706 Eukaryotic Initiation Factors Gene Family AT5G11170 27.642 2.10e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0236 11 1587395 1595866 Glsi11g0236 11 1587395 1595866 ECH