Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0230 ATGGACCTTGCACGATCGACCTCGGGGAATGCCGCGGACAATGTGGGGATACCAGATGATTTGCTATGCAAGAGGTCAGATGGGAAACAGTGGAGATGCACTGCCATGTCCATTCCAGATAAAACAGTCTGCGAGAAGCACTATATCCAAGCAAAGAAGAGGGCAGCTAATTCTGCAACGAGAGCGGAGACGCCAGCCGCAAGGAACACCTCTGTGCGTGATGCTCCAAAGCCAAATGACGATTCACCGGACGAAATCCCCCAGTATGTAGAGAATTGGATGTTTTATGAGTCACCACCTGCTTCTGGAATGGACTCACCCAGCAAAAGATCTCAAAGGAGTTTAGATGCCAATGTTACAACAGTCATATGCCAGGAATACTCTGATGGAAGTACAGATTCCTCTGATGATACTGGTGGACAAACTTGCGATCAGTGCCGAAGAAATGATAGAGACAGAGTTATTTGGTGCCTGAAATGTGATAGGAGAGGATACTGTGGTAGCTGTACATTAACATGAGGACTTGTCCTGCATGCCCTGGCACTTGCAATTGCAAAGTCTGCTTACGTGGTTTGGATACGCAAGATACCTGTTCTAGATAAGTTACAGTCTCTCCACTTGCTGTTGTCATCTGTGCTTCCTGTGGTAAAACAGATCCATCGTGAGCAGTGTTTAGAAGTTAAAATTGAAAAGAAGTTGTGGGGTAAGATGCATGATATACCTTCTTTGTGTTTGCTTGAAAATCTAGTGGATATGATTACTGATTATCACCAACTCGGCTCAAATTGTGCATATGATTTGTGCCTCAATTGCTGTCCAGATCTTCAAAAAGCAAATGTAAATCAAGACAAAGAAACCTCATCAGAGGAAGCAAAAATTTCTGATAGAAGCTTATTAAAGTTTTCTGATTGGAGATCCAACAGCGATGGCAGTATTCCATACCCCCCAAAGGAGTATGTTGAAGCATGGGCCTTACCTAGTGCATTTGAAGAATTTTCATTGCATCGAAGACCTGAATTTATCAGCAAACTGTCTTTACTTGAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGAGTTATATATCTTATGGTGTCAATCAGGAACTTGGTACAGGTGACTCAGCGACCAATCTCCACTTCAATATGTGTGATATGAGAACTAAAATTGAAAAGATACAAAAAGCTTATAAGAAATCTGAGGCGAAAGAATCACCTGAGGAGTTACAAATACAGTCAGAGGGGAGTTCACCTGATTTATCATGTGGTACGGAAAGAAATGGACAGGATTTGTATTCTAATGAGAAAAAGTCAATTATGGATCAAGGGTTTGAAATTTATTCTATTGCTGAAGGGGATATGGTCAATTCTGAACTTCCAATCAGACAAAATGGAGATATCTCTGAGAAAACAAATCCTAGAGTTCTTTGGGATGTCTTTCGTCGGCAGGGCGTTGCAAAGCTGACTGAATTTCTGACAATGCATTGGAAAGAATTTGGGAAGCCGAACGATATAGTAAAGAAATTTGCAAGAGTGGGGCCGTGGTCATTTGAACAGAAAGTAGGGGAACCTATATTTGTTCCTGCAGTGTGCCCTTTCCAAGCAACGAATGATCCGGCTGTAAGATTGGTGGAGGAAGTCTGCTGTCTGCCCAATGAACATGAAGCAAATCTTCAAGTATTGGAGGTTGGGAAGATATCTCTTTATTCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACGTGACCCGAAAACTACGAAAAGACGGTTAAGCGAAGGCAGATTACTTGTGCTTGAATACCCATTCAGTTTGGCAATTGAATCCGGAGAAAGGTCATGTATTATAAATCTGTTTGAGCAATATTCTAGAGGATGA 1929 0.4194 MDLARSTSGNAADNVGIPDDLLCKRSDGKQWRCTAMSIPDKTVCEKHYIQAKKRAANSATRAETPAARNTSVRDAPKPNDDSPDEIPQYVENWMFYESPPASGMDSPSKRSQRSLDANVTTVICQEYSDGSTDSSDDTGGQTCDQCRRNDRDRVIWCLKCDRRGYCGSCTLTXGLVLHALALAIAKSAYVVWIRKIPVLDKLQSLHLLLSSVLPVVKQIHREQCLEVKIEKKLWGKMHDIPSLCLLENLVDMITDYHQLGSNCAYDLCLNCCPDLQKANVNQDKETSSEEAKISDRSLLKFSDWRSNSDGSIPYPPKEYVEAWALPSAFEEFSLHRRPEFISKLSLLEYIHSKWGLLNVAAKLPHYSLQNDVGPKSYISYGVNQELGTGDSATNLHFNMCDMRTKIEKIQKAYKKSEAKESPEELQIQSEGSSPDLSCGTERNGQDLYSNEKKSIMDQGFEIYSIAEGDMVNSELPIRQNGDISEKTNPRVLWDVFRRQGVAKLTEFLTMHWKEFGKPNDIVKKFARVGPWSFEQKVGEPIFVPAVCPFQATNDPAVRLVEEVCCLPNEHEANLQVLEVGKISLYSASSAIKEVQKLVRDPKTTKRRLSEGRLLVLEYPFSLAIESGERSCIINLFEQYSRG 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0230 642 MobiDBLite consensus disorder prediction 1 21 - -
Glsi11g0230 642 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 44 319 IPR045109 GO:0032454|GO:0033169
Glsi11g0230 642 MobiDBLite consensus disorder prediction 413 445 - -
Glsi11g0230 642 MobiDBLite consensus disorder prediction 55 92 - -
Glsi11g0230 642 Pfam WRC 18 58 IPR014977 -
Glsi11g0230 642 ProSiteProfiles JmjC domain profile. 326 588 IPR003347 -
Glsi11g0230 642 MobiDBLite consensus disorder prediction 425 445 - -
Glsi11g0230 642 Gene3D Cupin 268 572 - -
Glsi11g0230 642 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Glsi11g0230 642 SMART cupin_9 333 581 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0230 Glsi-ChrGlsi11 1541321 1547825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0230 1 55 GRF Transcription Factor Family AT4G24150 40.000 3.48e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0230 11 1541321 1547825 Glsi11g0230 11 1541321 1547825 ECH