Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0228 ATGTCAAACATCACAAGTTGTGACAGTGGGAGCTTCTCCACAGAGAATATCAGAGAAGATGCAGTCCAACTGCGTCCAGAACTACTCGGTCAGTTCCATAGTCCTAATTCTCTCACTTCAACTACAACTAACAGCAATGGTTCCAACACAAATTCACAATTGCCACCTCCAACTGTTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAATGCTGAAGTAATTGCTCTATCGCCAACCACACTGATGGCCAAAAACAGATTCTTATGTGAAATATGCAACAAAGGATTCCAAAGGGATCAAAACCTTCAATTGCACAGGCGAGGCCATAACCTGCCATGGAAGCTTAAACAAAGAACGAGCACAGAAGTCCGAAAGCGGGTATATGTTTGTCCAGAACCCTCCTGCGTCCACCACAACCCGGCTCGAGCACTCGGTGATCTTACTGGCATTAAAAAGCACTTCTCCAGAAAACATGGCGAGAAGAAATGGAAATGCGACAAGTGCTCGAAGAGATACGCCGTTCAGTCTGACTGGAAAGCCCATTCAAAGATCTGCGGTACTAGGGAATACAAATGTGACTGCGGCACCATCTTTTCCAGAAGAGATAGTTTCATCACACATCGAGCTTTCTGTGACGCGCTGGCTGAGGAGAATATTAACAAAGCCAATGAAGGACAACTGCCAAAACTGGGTTCAAACTTGCGAGGCCAACAAATCCCAAATCTGGTTTCTTCATTACCTATCAACACTAATGTCAATCCACAGATTGGGACGTCGACCCAATTTAACCTTTCTGATATTAAGCATCCCTTATCATCACTCCCTTACGAGCTCATGGAAATCCCTGCAAAACCATTTAACTATATGCCTGGAAACGTATTCTCAAGAAGCCTTTCATCCAATCCTTCTCCATCACTTCAACTAAGTTCAAATTCACTGAATGTGTTTGAAGAAAATGAGCACCAATCAGCAGGGTCACCGCACATGTCTGCAACGGCATTGTTGCAGAAAGCTGCTCAAATGGGAGCAACTATGAGTAGCAGCAGCGTTATGAACTCTTGCACGAGGGAGAAGAGTTTTGTGACAAGCATGGCACCGCCATCATTTGGGGCTTCCTTCACGAACCAGTTTATGAACAGCGGGCAACATGAACTTTCATCTCAGTATTTGATCAACGGAAATGAGATGGGTAATAATAGCCTTGGAATGAACAGTGTGGATATGTTTAATGCTATATTGGATCAAAGCAAGACATTATCAAAGATGATAGAGCAGAATAGTCTAAGCAATAATAGAGTTTTGCATGGTGGAGGGGGTGCAATGATGAATGGTGGGCCAAGCAGTGGTATTGGTGGAACTAAAGGAAGCGGGGATGTGATGACACTGGACTTCTTGGGGATTGGAGGAGGAGGTGCTACACATGACCCTTTTCTCTGGCGCCCATCACCCTGA 1458 0.4465 MSNITSCDSGSFSTENIREDAVQLRPELLGQFHSPNSLTSTTTNSNGSNTNSQLPPPTVKKKRSLPGNPDPNAEVIALSPTTLMAKNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENINKANEGQLPKLGSNLRGQQIPNLVSSLPINTNVNPQIGTSTQFNLSDIKHPLSSLPYELMEIPAKPFNYMPGNVFSRSLSSNPSPSLQLSSNSLNVFEENEHQSAGSPHMSATALLQKAAQMGATMSSSSVMNSCTREKSFVTSMAPPSFGASFTNQFMNSGQHELSSQYLINGNEMGNNSLGMNSVDMFNAILDQSKTLSKMIEQNSLSNNRVLHGGGGAMMNGGPSSGIGGTKGSGDVMTLDFLGIGGGGATHDPFLWRPSP 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0228 485 MobiDBLite consensus disorder prediction 32 72 - -
Glsi11g0228 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Glsi11g0228 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 469 IPR031140 -
Glsi11g0228 485 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Glsi11g0228 485 Gene3D Classic Zinc Finger 144 223 - -
Glsi11g0228 485 Gene3D Classic Zinc Finger 68 135 - -
Glsi11g0228 485 MobiDBLite consensus disorder prediction 32 58 - -
Glsi11g0228 485 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Glsi11g0228 485 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
Glsi11g0228 485 SMART c2h2final6 89 111 IPR013087 -
Glsi11g0228 485 SMART c2h2final6 130 160 IPR013087 -
Glsi11g0228 485 SMART c2h2final6 165 185 IPR013087 -
Glsi11g0228 485 FunFam protein indeterminate-domain 12-like 68 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0228 Glsi-ChrGlsi11 1536161 1539129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0228 54 477 IDZ Gene Family AT1G03840 44.534 2.25e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g0228 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3127 02 79751297 79754598 Glsi11g0228 11 1536161 1539129 CCT
Glsi11g0228 11 1536161 1539129 Glsi11g0228 11 1536161 1539129 CCT
Glsi11g0228 11 1536161 1539129 Glsi11g0228 11 1536161 1539129 ECH