Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0220 ATGTTAAGTAGTATTATTAGAGTTCTAAGAAGAAATTTCAAAATTCTTTGTTTATTAGAGACAAATTTTAATCCAATGTGTTCTGGCTCCAGGAAATCCGGTGATAAATTGAGAATATTAAGACACACACAAATGCAAATGCAAGACATTTTCGGATCAGTTCGCCGATCACTGGTATTTCGCACTTCGCCTGAGAACGAAGAATCCTCACTTGGAGGAACCCTAGTTGATAAGATCAATTCTTGCATCCGCAAGTCCAGAGTCTTCTCTAAACCCTTGCCGGGGTCACCGCCATTGCCACCCATCCCCAAGGACTCTGCGCCTATGATCCGATGGCGCAAGGGCGAGTTGATCGGATGCGGAGCCTTTGGCCGAGTTTACATGGGCATGAATCTTGATTCTGGAGAGCTTCTAGCAGTAAAACAGGTTCTGATTGCAGCAAGTAGTGCTTCGAAGGAGAAGGCACAGGTTCACATAAAGGAGCTTGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCGCATCCCAACATTGTTAGATATTTGGGTACAGTTAGAGAGGAGGACTCCTTAAATATTCTTCTGGAGTTTGTACCTGGTGGATCCATATCATCCCTCTTGGGGAAGTTTGGGGCTTTCCCTGAAGCTGTCATAAGTACTTATACGAAGCAATTACTGCTGGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGATAATAAAGGATGCATAAAACTTGCAGATTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCTACTATTTCTGGTGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTTGGATGTACGGTGATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAGCAGTATCAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACAAAGTCTCATCCACCAATCCCTGATCATCTCTCAGTTGGAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCAATCTCGAGGCCATCAGCATCAGAACTGCTGCAGCATCCCTTTGTTACTGGTGAACACACGGGTCCAGTTTCTCTGTCATATACTGCGATGGAAAATTTTGAAGCACCTTCAGTATCTTGTGCTCCAATTGTCAAAACCTCTCTGTGCTGCTCAACTGTAAATCCTCAGGAAACAGTAAATAAAGAGATTTGGGGAACGAGCAATGATGACGACATGTGTGAGATTGATGACAATGGGTTTTCTGAGGGGGATGTCAAATTCAGATCCTCCTTGATATCAGAAAACATTAAGAGTTTCAACCCTATGTCTGATCCCTCTGATGATTGGGATTGCAAATTTGATGGGAGTCCAGAACTGGACGATAGAGGAGTTACTATTTGTACTGATGAAATTTACATGCCTTCTGGCCCCCCCGGGGCTCTTCATGAGGAGCAGAAAGACTTTTCCTTCCCATGCGCCACTTCTGTGTCTGAGGAAGATGATGAGCTCACGGAGTCAAAAATAAAAGCCTTTTTGGATGAAAAGGCTTTAGAACTGAAAAAACTGCAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGCGGTAGAAAGCACAAGTGACGAAACTGCTTTGAAGTACTTGAAATTACCTCCTAAAAGTAGGTCACCAAATCGGGTGCCAATTGGCTCTCCATCTAAAGCAGTTGACAATACTGGAAGTCCTGGAAGTAATGGCAGGCCCTCATCAAATCTCGGCAACGCGAATGATTATAATGATAATAGTTCACAGCAAATTCCATCACCACCTCTCAATGAAGGCAAAGGATTACTAGTGGACTCCAAGCTGGAGCCAAGTAGCCCAAGTTTAAGCTTTTCTGAGAGACAGAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGCCAAGCTGGCATGGGGGGGAAAACATCGTCACCGAAGGATCGAGCTTTACATCGGCAGAGAGAGCGGACAAGATTTGCATCTCCTAGCAAATAA 2115 0.4397 MLSSIIRVLRRNFKILCLLETNFNPMCSGSRKSGDKLRILRHTQMQMQDIFGSVRRSLVFRTSPENEESSLGGTLVDKINSCIRKSRVFSKPLPGSPPLPPIPKDSAPMIRWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVLIAASSASKEKAQVHIKELEEEVKLLKDLSHPNIVRYLGTVREEDSLNILLEFVPGGSISSLLGKFGAFPEAVISTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPDHLSVGAKDFLLKCLQKEPISRPSASELLQHPFVTGEHTGPVSLSYTAMENFEAPSVSCAPIVKTSLCCSTVNPQETVNKEIWGTSNDDDMCEIDDNGFSEGDVKFRSSLISENIKSFNPMSDPSDDWDCKFDGSPELDDRGVTICTDEIYMPSGPPGALHEEQKDFSFPCATSVSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNAVESTSDETALKYLKLPPKSRSPNRVPIGSPSKAVDNTGSPGSNGRPSSNLGNANDYNDNSSQQIPSPPLNEGKGLLVDSKLEPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0220 704 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 81 380 - -
Glsi11g0220 704 SMART serkin_6 112 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0220 704 ProSiteProfiles Protein kinase domain profile. 112 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0220 704 MobiDBLite consensus disorder prediction 576 704 - -
Glsi11g0220 704 Coils Coil 145 172 - -
Glsi11g0220 704 MobiDBLite consensus disorder prediction 585 629 - -
Glsi11g0220 704 SUPERFAMILY Protein kinase-like (PK-like) 111 375 IPR011009 -
Glsi11g0220 704 Coils Coil 655 675 - -
Glsi11g0220 704 Pfam Protein kinase domain 113 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0220 704 FunFam Mitogen-activated protein kinase kinase kinase 2 111 401 - -
Glsi11g0220 704 MobiDBLite consensus disorder prediction 685 704 - -
Glsi11g0220 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Glsi11g0220 704 CDD STKc_MAPKKK 111 374 - -
Glsi11g0220 704 MobiDBLite consensus disorder prediction 653 675 - -
Glsi11g0220 704 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Glsi11g0220 704 Gene3D Transferase(Phosphotransferase) domain 1 111 400 - -
Glsi11g0220 704 FunFam Serine/threonine-protein kinase STE11 108 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0220 Glsi-ChrGlsi11 1452752 1459013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0220 47 704 MAP Kinase Kinase Kinase AT1G54960 57.326 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi11g0220 Pkinase 2.2e-71 CL0016