Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0201 ATGCACACTCATTACGGCACCACCGGCTCAGTTATGGGTAACATATTTTTGTCATCTATTTTGGATGGCCATGATTACTTGCAAATGCATTTTTCCTTATATGCTGCCAAACATACTGATGGTCTAGAACTTGAATTGCGATACCTTGTCCTTAATATTGCAGAGCATCGCCTCGCCTCGCCTACTAGAGAAGGTAGCAACTCTCGGATGGATCATCAAGGGCATAGCCAGAATCCATCTATGGGGGTTGTTGGTAGTGGAGCTCAATTGCCGTATGGTTCTAGTCCATACCAGCCAAACCAAATAACTGCGACACCAGGATCCGCTGTTACATCAGTTGGGACCATTCAATACACTGGTCAGCCTGCTGGAGCTCAGCTGGGACAACATCAACTTGCTTATCAGCATATTCACCAGCAACAACAGCAGCAACTTCAGCAACAAATCCAAACATTTTGGGCAGATCAGTACCAAGAAATTGAGAAGGTAACTGATTTTAAGAATCACAGCCTTCCTCTGGCAAGGATCAAGAAGATAATGAAGGCAGATGAGGATGTTAGAATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCTTGCGTTCTTGGAACCACACTGAAGAGAACAAAAGGAGAACACTTCAAAAAAATGATATCGCAGCAGCAATCACAAGGACTGATATCTTTGATTTCTTGGTTGACATTGTGCCCCGGGAGGACTTGAAAGATGAAGTACTTGCATCTATCCCGAGAGGAACTATGCCTGTTGCTGGGCCTGCTGATGCACTTCCTTATTGCTATATGCCACCTCAGCATGCCCCACAAGTCGGCACTGCAGGTGTCATAATGGGTAAGCCCATGATGGACCCCGCCATGTATGCTCAGCAGTCTCATACCTACATGGCACAACAAATGTGGCCACAGCCACCTGAGCAACAACAGTCATCTCCAGATCATTAG 990 0.4545 MHTHYGTTGSVMGNIFLSSILDGHDYLQMHFSLYAAKHTDGLELELRYLVLNIAEHRLASPTREGSNSRMDHQGHSQNPSMGVVGSGAQLPYGSSPYQPNQITATPGSAVTSVGTIQYTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQIQTFWADQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPQVGTAGVIMGKPMMDPAMYAQQSHTYMAQQMWPQPPEQQQSSPDH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0201 329 Gene3D Histone, subunit A 132 248 IPR009072 GO:0046982
Glsi11g0201 329 MobiDBLite consensus disorder prediction 61 81 - -
Glsi11g0201 329 FunFam Nuclear transcription factor Y subunit gamma 135 248 - -
Glsi11g0201 329 Pfam Core histone H2A/H2B/H3/H4 131 233 IPR007125 GO:0003677
Glsi11g0201 329 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 129 295 - -
Glsi11g0201 329 MobiDBLite consensus disorder prediction 60 81 - -
Glsi11g0201 329 SUPERFAMILY Histone-fold 138 242 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0201 Glsi-ChrGlsi11 1359354 1363273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0201 70 316 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.484 8.01e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi11g0201 CBFD_NFYB_HMF 8.6e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0201 11 1359354 1363273 Glsi11g0201 11 1359354 1363273 CCT
Glsi11g0201 11 1359354 1363273 Glsi11g0201 11 1359354 1363273 ECH