Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0196 ATGAGCTTCATCTCTGATCAACGCAAACAAATATGTAGCTCCTCCACTACTTACGGAATCATGCCGCTCTGCTTCCTCCTCCTTCTCCTCTCTCCAGAAATCCCCCTCGCCGGAGCACAAACTGGAAACAATGGCCCCACCGACCCCTACTACAACCGCTTCAGCCCATCTATGGCCATCATCATCGTCATATTAGTCGCCGCTCTTTTCCTCATGGGCTTCTTCTCTATCTACGTTCGCCGGTGCGCTGGTTCAGCCTCCAACAGCGCTGGACCTCTCGGCGGTGTGGCGGGTCGTTCCAGGCGTCAGCCGCGTGGCCTTGATCCCACTGTCATCGAGACCTTCCCCACTCTAGAGTACTCGGTGGTTAAGATTCACAAGATTGGGAAAGGAGCACTAGAATGCGCCGTTTGCTTAAACGAGTTCGAGGACTCTGAAACTCTGCGTTTAATCCCCAAGTGCGACCACGTCTTCCATCCCGACTGTATCGACGAGTGGTTGACTTCCCATACTACCTGCCCGGTTTGCCGAGCCAACCTCGTTCCCCAGCCCGGCGACTCTCTGCACGGAGTTCCGGTGCTAAACCCCGCGTCAGATATCGAAGCCCAAAACGACGTCGTGGATCCCGTATCCCAACAACCAAATGCGGACGTTGACCGTGATGCGGCGGAACCCGAGGTTATGGGACTGAATCAGACGCTGAACCGAAACCGTACGCGAGGGTCTCAGTCGAACCGGACACGCAGGTTCCCCCGATCACACTCGACGGGGCACTCATTGGTCCAACCGGGTGAAAACACCGATCGCTTCACTTTGAGACTGCCGGTGGAAGTGAGGAATCAGATACTAAACCAAAAATTGCATCGCGCCACAAGCTTGGTAATCTTGCCTAGAGAAAGTAGTTCAAGGCGGGGATATCGAACTGGTGGTGAGGGTAGTAGTAGAGGCAGGTCTTCGAGGCGACTGGACCGGGGGTTCAAATCAGACCGATGGGTTTTCACGATGGCGCCACCGTTCTTAGTGAGGGCGTCGTCGATTAGATCCCCAAGGGTGGCTAGTACTAGTAGAACCGGTGAAGAGACCTCCGCCGACCCTATCATGCCGCCATCGGCGGTGGACTCGGCGAGGCCTCCGGTTTAA 1140 0.557 MSFISDQRKQICSSSTTYGIMPLCFLLLLLSPEIPLAGAQTGNNGPTDPYYNRFSPSMAIIIVILVAALFLMGFFSIYVRRCAGSASNSAGPLGGVAGRSRRQPRGLDPTVIETFPTLEYSVVKIHKIGKGALECAVCLNEFEDSETLRLIPKCDHVFHPDCIDEWLTSHTTCPVCRANLVPQPGDSLHGVPVLNPASDIEAQNDVVDPVSQQPNADVDRDAAEPEVMGLNQTLNRNRTRGSQSNRTRRFPRSHSTGHSLVQPGENTDRFTLRLPVEVRNQILNQKLHRATSLVILPRESSSRRGYRTGGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVASTSRTGEETSADPIMPPSAVDSARPPV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0196 379 CDD RING-H2_EL5-like 134 177 - -
Glsi11g0196 379 PANTHER RING FINGER DOMAIN-CONTAINING 48 184 - -
Glsi11g0196 379 MobiDBLite consensus disorder prediction 347 361 - -
Glsi11g0196 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 182 IPR013083 -
Glsi11g0196 379 MobiDBLite consensus disorder prediction 347 379 - -
Glsi11g0196 379 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Glsi11g0196 379 MobiDBLite consensus disorder prediction 301 322 - -
Glsi11g0196 379 SMART ring_2 135 176 IPR001841 -
Glsi11g0196 379 MobiDBLite consensus disorder prediction 210 266 - -
Glsi11g0196 379 FunFam E3 ubiquitin-protein ligase ATL6 96 183 - -
Glsi11g0196 379 Pfam Ring finger domain 134 177 IPR001841 -
Glsi11g0196 379 SUPERFAMILY RING/U-box 130 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0196 Glsi-ChrGlsi11 1330219 1333633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0196 19 354 Rapid Response to Elicitors AT3G05200 48.105 4.05e-94 285