Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0195 ATGTGTGTTGGAGAGGGAGAGGTAGATAGCCAGACATCCATGGCTCTAGAAGCAGTGGTATATCCACAAGACCCATTTGGTTATGGCGGCAAAGACATCTACAACTTGTTACCAGGTGCAGGTACCTGGGCCTATGGCGACTTGAACCTCGGAAAAGAAGAAGAGCAAGGCTCCGTTGGTTTCCTCGACAGCCAAACAGAAAATTATCCCTATGTTTATGGAGACTGGAGTTGCTCTGCCCCATCAATGTTGCCCCACTTGAATGAACTTCATCTCTCCAATCCATCCTCAGAGGCTACCAACGCCAGTGAACCCCACAACTTGGACACCTCCACTTCCGTGCCTGTTCGTCCTAAGAGACGCAGAGCCAAAAGCCGAAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCCGTGGAGCGCAATCGAAGAAAGCAAATGAACGAGTATCTCTCCGTTCTTCGCTCTCTCATGCCGGACTCCTACGTCCAAAGGGGTGATCAAGCTTCCATAATTGGAGGTGCTATTAATTTTGTGAAGGAGCTTGAGCAGAGACTGCAATTTCTTGGCGCTCAGAAAGAAACAGAGGGGAAATCTGAAGCGGGTGCAAATATGCCCTTTTCTGAGTTCTTCAGCTTTCCCCAGTACTCAACAACTTGTGTTGAGCAAGTGGGTGAGGTTCAGTCTAGTATTGCAGATATAGAAGTGACAATGGTGGAGAGCCATGCAAATCTCAAAATAAGATCGAGGAAGCGGCCAAAGCAGCTGTTAAAGATGGTCTCTGCTTTGCATAGCATGCGTCTCACGATCTTGCATCTAAATGTCACGACCACCGATGAATTTGTCCTCTTTTCTCTCAGTGTCAAGTTGGAAGATGAGTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCTGTAAACCAAATTGATGGTGCCTTGAAGTGGGCTCCTTGGAGGAAGTTTTTGGTTTATTCCCTCTCATTTATGTCTTGCATTGCTCCTTTTGCTCTCTGTCTCTCGCTTTCTTCTTTTACTCTGGGTAGGGATTGGGGAGGCTGTAGTATATTGTGCTCGGTCAATTCTGCCTACCTTGCTTTGATGGTGGAAAAGTGGCCATTCAACATTGGTCTCATTCTTCGAGTCGTAGTGATGGGCATGCTATATATAGCTATATACCTACCCCGTTTACGCTACGTAAAAGATGAGATTCGTGATTATTTGTGCTTTGCAATTGCATGGATATACATTGTAGTTGTAGTTGTAGTTGTAGGTGTAGATTGGGGGCAGTTTTGCATCCCTAAGCAAATGAGAAACAAACAAAAAGGGATTGATGCAATTCTGCTGCTTATCCGGAAAACAAAAAGTTCTGCTATTGCTGTCACTCTTACTTTATTGGGTCAATGGGTCATCGTTTGTCCCGTAGCATCAAAAGTTAGGTATGCGTTTCTCTGGAATCTGCATGCCATATCAGCATTATAG 1488 0.453 MCVGEGEVDSQTSMALEAVVYPQDPFGYGGKDIYNLLPGAGTWAYGDLNLGKEEEQGSVGFLDSQTENYPYVYGDWSCSAPSMLPHLNELHLSNPSSEATNASEPHNLDTSTSVPVRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGAQKETEGKSEAGANMPFSEFFSFPQYSTTCVEQVGEVQSSIADIEVTMVESHANLKIRSRKRPKQLLKMVSALHSMRLTILHLNVTTTDEFVLFSLSVKLEDECKLGSVDEIAAAVNQIDGALKWAPWRKFLVYSLSFMSCIAPFALCLSLSSFTLGRDWGGCSILCSVNSAYLALMVEKWPFNIGLILRVVVMGMLYIAIYLPRLRYVKDEIRDYLCFAIAWIYIVVVVVVVGVDWGQFCIPKQMRNKQKGIDAILLLIRKTKSSAIAVTLTLLGQWVIVCPVASKVRYAFLWNLHAISAL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0195 495 Gene3D - 120 200 IPR036638 GO:0046983
Glsi11g0195 495 PANTHER MAX DIMERIZATION, MAD 79 312 - -
Glsi11g0195 495 MobiDBLite consensus disorder prediction 91 131 - -
Glsi11g0195 495 CDD bHLH_AtFAMA_like 137 209 - -
Glsi11g0195 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 185 IPR011598 GO:0046983
Glsi11g0195 495 MobiDBLite consensus disorder prediction 91 114 - -
Glsi11g0195 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 198 IPR036638 GO:0046983
Glsi11g0195 495 SMART finulus 140 191 IPR011598 GO:0046983
Glsi11g0195 495 Pfam Helix-loop-helix DNA-binding domain 135 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0195 Glsi-ChrGlsi11 1314832 1319653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0195 14 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.553 5.60e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g0195 HLH 8.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0195 11 1314832 1319653 Glsi11g0195 11 1314832 1319653 CCT
Glsi11g0195 11 1314832 1319653 Glsi11g0195 11 1314832 1319653 ECH