Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi11g0192 | ATGGCTTTGCTCGAAGCCACTCCTACTTTGTCACCTCTCCAAGTTACCTCATCATATCTCAACACTAGCACCATTGTCGCCCTCTGTGTTTTCTTTGCACTTCTCTGCGCTTGCATCATCATCGGCCATCTTCTGGAAGAAAACCGATGGGCCAATGAATCCATCACCGCCCTCCTTCTGGGGTTGTTTTCTGGAGCGGTGGTGTTGCTGGTCACCAATTTCAAAAGCACCCAATTACTAGTATTCAGCGAAGACTTGTTCTTTCTTTACTTGCTTCCCCCAATCATTTTCAATGCTGGTTTCCAAGTCAAGAAGAAGCAGTTCTTCAAGAATTTCACAACTATTCTGCTGTTTGGAGTCTTTGGAACTGTTATTTCATTCTGCCTCATATCACTTGGTGCCTTTCTGCTGATTAGGAGGATTGGCATAACGAACCTGAGCATAAAGGATTACCTAGCCATTGGTGCCATATTGTCAGCAACTGACTCAGTTTGTACATTGCAGGTTCTCAATCAAGATGAAACACCCTTCCTATACAGCATCGTATTTGGAGAGGGAGTAGTAAATGATGCTACATCTATCGTACTTTTCAATTCAGTTCAGTCACTTGACTTCAGCAACATCGATGCTATTACGGCCTTGAAATTGTTGGGGACCTTCCTTTACCTCTTCTGCACTAGTACTGCCCTTGGTATCTCAGTTGGCCTGCTGAGTGCTTATATTATAAAAACACTTTACTTTGGAAGGCATTCTACAGATCGTGAAGTTGCACTCATGATGCTTATGGCATATTTGTCATACATGATCGCTGAGCTTTTAAATCTTAGTGGGATTTTGACAGTTTTCTTCTGTGGCATTATTATGTCACACTACACATGGCACAATGTTACAGAAAGCTCAAGGATAACAACCAAGCATTCCTTTGCAACTATCTCATTCATTGCTGAAACCCTTATATTTCTATATGTGGGCATGGATGCTTTAAACATTGAGCTGTGGAAAACCAGCAACGCAAGCGCAGGCACTTCAATTGCTGTCAGTTCAACTTTCTTTGCATTAGTGTTGATTGGAAGGGCAGCTTTTGTGTTTCCTATTGCAAACATTAAAAATTGCATCAAGACAAGAGAGAGTACCAAAATTGAGTTCCGATCGCAGTTCATAATATGGTGGGCAGGCCTATTAAGAGGTGCAGTGACTATTGCCTTGTCTTATAACCAGTTTGCAAAATCCAAGGAAGATTCAGCTCAAGTTTGTGCATTAATGATCAACTCTACTATAATTGTCGTTTTATTCAGTACTATGGTTTTTGGTTCCATAACAAGGCCTCTGATTGAGGCAGTGCGTGTAAGGCATTCAAAAGCAGACACTTCTGATTCCACTGAAATTGGAGAGGATTTGAGAGTCTTATTCCTGGAAGATGGTGGTCCGAGTAACCAAGCCAACAATCAGCCAAATCGTAGACGAAGTAGCCTAAGTTTGCTGATAAGTCACCCTACTACTACTGTTCACTACTTTTGGCGGAAATTTGACGATAAATTTATGAGACCAGTATTTGGTGGAAGGGGTTTTGTTCCATATGTTCCTGTTTCACCATCTGGTGCAGCAGAAGAGACATGTTGA | 1620 | 0.4173 | MALLEATPTLSPLQVTSSYLNTSTIVALCVFFALLCACIIIGHLLEENRWANESITALLLGLFSGAVVLLVTNFKSTQLLVFSEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTILLFGVFGTVISFCLISLGAFLLIRRIGITNLSIKDYLAIGAILSATDSVCTLQVLNQDETPFLYSIVFGEGVVNDATSIVLFNSVQSLDFSNIDAITALKLLGTFLYLFCTSTALGISVGLLSAYIIKTLYFGRHSTDREVALMMLMAYLSYMIAELLNLSGILTVFFCGIIMSHYTWHNVTESSRITTKHSFATISFIAETLIFLYVGMDALNIELWKTSNASAGTSIAVSSTFFALVLIGRAAFVFPIANIKNCIKTRESTKIEFRSQFIIWWAGLLRGAVTIALSYNQFAKSKEDSAQVCALMINSTIIVVLFSTMVFGSITRPLIEAVRVRHSKADTSDSTEIGEDLRVLFLEDGGPSNQANNQPNRRRSSLSLLISHPTTTVHYFWRKFDDKFMRPVFGGRGFVPYVPVSPSGAAEETC | 539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi11g0192 | 539 | Gene3D | - | 147 | 199 | - | - | |
| Glsi11g0192 | 539 | NCBIfam | sodium/hydrogen exchanger 3 | 27 | 457 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Glsi11g0192 | 539 | Pfam | Sodium/hydrogen exchanger family | 30 | 445 | IPR006153 | GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600 | |
| Glsi11g0192 | 539 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 25 | 518 | IPR018422 | GO:0006812|GO:0015385|GO:0016020|GO:1902600 | |
| Glsi11g0192 | 539 | PRINTS | Na+/H+ exchanger signature | 155 | 165 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Glsi11g0192 | 539 | PRINTS | Na+/H+ exchanger signature | 100 | 114 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Glsi11g0192 | 539 | PRINTS | Na+/H+ exchanger signature | 86 | 97 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Glsi11g0192 | 539 | PRINTS | Na+/H+ exchanger signature | 115 | 123 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi11g0192 | Glsi-ChrGlsi11 | 1286115 | 1293121 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi11g0192 | 15 | 532 | Antiporters | AT3G05030 | 61.842 | 0.0 | 667 |