Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0177 ATGTCGATGGGTACGGTGTTTATCAAGCTCAGCAGAAATGCTAACTTGGCGATCCATCCTCATTTGAGTTTGTTTTCAATGGACAACCAGAGGAGTTGTGCCAACAAACTGAAGAAGGACCCAGGGAACGATGTTTTTAATGTGAAACATAAAAGACGAGGCTTTTTGTTTTCTTCCTCTGCTTCCGCCCGAGACTTCAGACAATTGAATTTGGAGAAGGAGAAAAAAGACGCCTCATCTCCTAAAGGAGTTTTAGAAGCCTGCGTTAGAGGCTTTGATTTTCCGCAGTCACCTGGTTGTTCTAGTTCGAAGGCACTGTTTCAGTGGAGCAAAATTTTCAAACGGGCGGAAATACGATCATTTAAGCGTCTAGCGTCCTTCCCTCCATTCGGTGTGCCAAATATAACCAGAGGGAAAAACAGAAGCACTAGAGAAAATCCTGTTCTAAGTAATATATACAGCTTCAGGTCTTCACCGGTGAATTTCAGCCTCTCTGACCTGAGAAATGCTACCAACAATTTTAGCAATGAAAATTTAATTGGAAGGGGTGGTTATTCTGAAGTTTACAAGGGTCGTCTCCAAGATGGGCAACTAATAGCTGTAAAGCGATTGACTAAAGGGACCCCAGATGAGAGAACAACAAGCTTTCTATCTGAGCTAGGTATTATTGCTCATGTTGACCATCCTAATGCTGCCAAGCTTATTGGATGTGGTGTGGAAGGAGGGATGCACCTTGTCTTCCAACTATCTCCCCTGGGTAGTTTAGGATCTCTCCTTCATGGTTCAAATGATAACAAATTAGATTGGAGTAAGAGGTATAAGATTGCTCTGGGGATAGCTGATGGTCTCCTCTATCTTCATGAGAGTTGTCCCAGGCGAATTATTCATAGAGACATCAAGGCAGAGAATATTCTGCTCACAGAGAACTTGGACCCACAGATTTGTGATTTTGGGCTGGCAAAGTGGTTACCCAAGCAATGGACTCACCATAATGTATCAAAATTCGAAGGCACATTTGGCTATTTTGCTCCTGAATATTTCATGCATGGCATAGTGGACGAGAAAACTGATGTCTATTCTTTTGGGGTTCTACTTTTGGAGCTTATAACCGGTCGTCAAGCTTTGGATAATCTGCAGCAGAGTGTGGTAATATGGGCAAAGCCTTTGCTTGACGCTTATAATAATGAAGACCTTGTTGATCCTTGTCTTGGTGATAACTATGACCGAGATCAGATGAGTTGTGTTGTTTTGACTGCATCTCTGTGTGTTGAGCAGTCTCCTATCTTACGTCCCCGCATGAGTCAGGCAAGCACACAACCTGGAAACAATGGCATTATTAGTATTACCAATATGATTGAAGCTACCTCGTCTATTTTGTTTACCAGTTATGGGAGGATCATAGGTAATGTAAGGTTGCAGAACATTGATCATAATTTGTGCGTTGGCTTGGGTGCAGGTTGCGATACTGCTAAGAGCAAGAGCCCTTCATTGACTATGAAGAACCACGCCAAAGAAAATCATAGCAAGGGCAATGGATTTATCCCGTCTTCTTTCAAGTTCATATCTTCTTGCATTAAGACTGCCTCCTCTGGTGTCCGTTCTGCCAGCGCCTCCGTCGCTGCCTCCATCTCTTGCGATGGGGATGACCACAAAGACCAGGTGCTTTGGGCTTGCTTTGACAGGCTAGAACTTGGTTCATGTTCTTTCAAACATGTCCTCTTACTCGGCTACTCCAATGGCTTTCAAGTTCTTGATGTTGAAAATGCCTCTAATATCCGTGAACTCGTCTCAAAGCGGGATGATCCAGTTTCGTTTTTACAGATGCAGCCTGTCCCTGCGAAGTCTGAGGGGTGTAAAGGATTTAGAGCATCACATCCACTACTCTTAGTTGTTGCATGTGATAAATCAAAGATCCCAGGTACAATGCAAAATGGGAGAGATGGATATACCGAACCTCATGCTGAAAACATTGTCAGCTCAGCTACAGCTGTTCGATTTTACTCACTTAGGTCCCATAGCTATGTTCATGCTCTGAGATTTCGTTCAACTGTGTATATGGTTAGATGCAGTCCTCAAATAGTGGCAGTAGGTCTTGCTGCACAAATATACTGTTTTGATGCTCTTACTCTTGAGAATAAATTCAGTGTCCTCACTTATCCTGTACCTCAGTTGGGAGGCCAAGGAATGGTTGGGATTAATATTGGCAATGGTCCCATGGCTGTAGGGCCCCGGTGGTTAGCTTATGCTTCTAACAACCCAATGCTGTCAAGTACAGGTCGTCTAAGTCCTCATAATCTTACTCCTCCTGCTGTCAGCCCATCAACATCACCAGGTAGTGGAAACCTGGTAGCCCGATATGCCATGGAATCGAGCAAGCACTTGGCTGCTGGACTGATAAACATCAGTGACATGGGATACAAAACATTGTCTAAATACTATCAGGATCTTATACCAGATGGATCTAGTTCTCCTGTATCATCAAATTCAAGCTGGAAAGTTAGTCGGTTTACATCACATTCTACAGAAACAGATACTGCTGGGGTGGTTGCTATCAAGGACTTTGTTTCTAGAGCTGTTGTGGCGCAATTTAGGGCCCATACTAGTCCAATCTCTGCTTTGTGTTTCGACCCAAGTGGGACCCTTTTAGTTACTGCCTCAATTCATGGGAACAACATTAATATATTCCGAATTATGCCATCCTGCTCAAAGAATGGATCAGTTTCTCAAAACAGTGATTGGAGCTGTTCTCATGTGCACCTATACAAGCTTCATCGTGGCATGACATCAGCTGTTATTCAAGACATATGTTTTAGTCATTACAGTCAGTGGGTTTCCATTATTTCTTCCAAGGGTACTTGTCATATCTTTGTTCTTGCCCCTTTTGGTGGTGAGACAGTTCTTCAGACACAGAATCCGGACACAGAGGGGCCTGCTCTTTTGCCAATTTTTCCTCTACCATGGTGGTTCACTCCTGGTTTCACAGTAAACCAGCAACAGTTTTCCCTGGCACCCCCGCCTCCTGTTATTCTCTCTGTGGTTAGCAGAATAAAAAATAGTAATGCGGGATGGCTTAATACAGTTAGTAATGCTGCATCTTCTGCAGCAGGGAAAGTCTCCATTCCATCTGGTGCTGTTTCTGCTGTTTTTCATAGTTCCTTGCCTCATGATTCAAACAATGCATACACGAAAGCTCATGCTTTGGAGTACTTATTGGTTTATACTCCTTCTGGTCACTTAGTTCAATATAAACTACTTCCTTCAATGGGGGCAGAGCCAATTGAAACTACTTCCAGAACAGCCCCACCTCCTTCAGCACAGATACAAGAAGAGGATTTGCGAGTGAAAGTTGAACCTGTTCAATGGTGGGATGCCTGTAGGAGAAATGATTGGCCAGAAAGAGAGGAATATATTTCGGGAAAAACTCTTTGTGGACCAGAAGCTGAAGAAATGAGCTTGGAGAATTCAGATTATGAAGAAGATAGTGTTGGTATGAATAATTCTACAAAATTTTATGAGCAATGTCACTTCTCAAATGCAGAGGTTCATATCAACTCTGGGAGGATACCAATTTGGCAGAAATCTGAGGTGTCTTTCTATGTGACGAGTCCTTTGGAGGCCAAGGAGCAGAATTTAGGTGAAAGCTGCCAAACCAATGGAGAGATTGAAATAGAGAATATTCCTGTTACTGAGGTTGAAATAAGACAGAAGGATTTGTTGCCTGTCTTTAATCATTTTCATAGAATTCAGTCCACTTGGGGTGACAGAGGCATTATTATGGGAAGATTCTCAAGTTCTTCATCCGATTCACATGGAGTTGAAGATAGGTTGTCAGAAGATGCTGTAATTTCCCATTCAAAGTTGATGGTACCTGGCTCAGCTGAAAAGGCAGATGGTGGCTTATCAAGATATTTTTCTTCATCAACTGACTTGTCTGGAAACGGGACTGATTGCAAGAACAGAGAGGAAGGTCTGTTGGCATCACCCGTTTTAAGGCAGGAAATGGTTAATGTGGATGATGTTTCAACAGGTGGCTCACATTTTGCTGATATTGTAACTACAGAATCTAAATCATCAAAGAGTACCCGAGCCAGTGACAATTTAAATCCGAGTTTTGGTGTTTATAATTTGAATATGAACGTTACTCATGGGGAGCCAACACATGACTCACCCAACTTTGAGCAATTTTTTCACGAAGGTTATTGTAAAGCAGTTGACTGTCGTAAATTAACAGAAGTTGCTACTGATGTTGATTGTAGCAGTCCCTGTGGCAGGGAGAAATCTGAGCAGGACAGCGATCAGGATGACATGCTTGGTTGTGTATTTGACTTCTCTGAGGAAGGTTGA 4344 0.4279 MSMGTVFIKLSRNANLAIHPHLSLFSMDNQRSCANKLKKDPGNDVFNVKHKRRGFLFSSSASARDFRQLNLEKEKKDASSPKGVLEACVRGFDFPQSPGCSSSKALFQWSKIFKRAEIRSFKRLASFPPFGVPNITRGKNRSTRENPVLSNIYSFRSSPVNFSLSDLRNATNNFSNENLIGRGGYSEVYKGRLQDGQLIAVKRLTKGTPDERTTSFLSELGIIAHVDHPNAAKLIGCGVEGGMHLVFQLSPLGSLGSLLHGSNDNKLDWSKRYKIALGIADGLLYLHESCPRRIIHRDIKAENILLTENLDPQICDFGLAKWLPKQWTHHNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLELITGRQALDNLQQSVVIWAKPLLDAYNNEDLVDPCLGDNYDRDQMSCVVLTASLCVEQSPILRPRMSQASTQPGNNGIISITNMIEATSSILFTSYGRIIGNVRLQNIDHNLCVGLGAGCDTAKSKSPSLTMKNHAKENHSKGNGFIPSSFKFISSCIKTASSGVRSASASVAASISCDGDDHKDQVLWACFDRLELGSCSFKHVLLLGYSNGFQVLDVENASNIRELVSKRDDPVSFLQMQPVPAKSEGCKGFRASHPLLLVVACDKSKIPGTMQNGRDGYTEPHAENIVSSATAVRFYSLRSHSYVHALRFRSTVYMVRCSPQIVAVGLAAQIYCFDALTLENKFSVLTYPVPQLGGQGMVGINIGNGPMAVGPRWLAYASNNPMLSSTGRLSPHNLTPPAVSPSTSPGSGNLVARYAMESSKHLAAGLINISDMGYKTLSKYYQDLIPDGSSSPVSSNSSWKVSRFTSHSTETDTAGVVAIKDFVSRAVVAQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSCSKNGSVSQNSDWSCSHVHLYKLHRGMTSAVIQDICFSHYSQWVSIISSKGTCHIFVLAPFGGETVLQTQNPDTEGPALLPIFPLPWWFTPGFTVNQQQFSLAPPPPVILSVVSRIKNSNAGWLNTVSNAASSAAGKVSIPSGAVSAVFHSSLPHDSNNAYTKAHALEYLLVYTPSGHLVQYKLLPSMGAEPIETTSRTAPPPSAQIQEEDLRVKVEPVQWWDACRRNDWPEREEYISGKTLCGPEAEEMSLENSDYEEDSVGMNNSTKFYEQCHFSNAEVHINSGRIPIWQKSEVSFYVTSPLEAKEQNLGESCQTNGEIEIENIPVTEVEIRQKDLLPVFNHFHRIQSTWGDRGIIMGRFSSSSSDSHGVEDRLSEDAVISHSKLMVPGSAEKADGGLSRYFSSSTDLSGNGTDCKNREEGLLASPVLRQEMVNVDDVSTGGSHFADIVTTESKSSKSTRASDNLNPSFGVYNLNMNVTHGEPTHDSPNFEQFFHEGYCKAVDCRKLTEVATDVDCSSPCGREKSEQDSDQDDMLGCVFDFSEEG 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0177 1447 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 251 451 - -
Glsi11g0177 1447 Pfam Breast carcinoma amplified sequence 3 1005 1240 IPR022175 -
Glsi11g0177 1447 Gene3D Phosphorylase Kinase; domain 1 135 248 - -
Glsi11g0177 1447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Glsi11g0177 1447 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 506 1429 IPR045142 GO:0006914
Glsi11g0177 1447 MobiDBLite consensus disorder prediction 1419 1447 - -
Glsi11g0177 1447 SMART serkin_6 174 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0177 1447 Gene3D - 532 974 IPR015943 GO:0005515
Glsi11g0177 1447 Pfam Protein tyrosine and serine/threonine kinase 177 384 IPR001245 GO:0004672|GO:0006468
Glsi11g0177 1447 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 150 249 - -
Glsi11g0177 1447 Gene3D Transferase(Phosphotransferase) domain 1 251 445 - -
Glsi11g0177 1447 ProSiteProfiles Protein kinase domain profile. 174 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0177 1447 FunFam Autophagy-related protein 18h 539 974 - -
Glsi11g0177 1447 SMART WD40_4 914 957 IPR001680 GO:0005515
Glsi11g0177 1447 SMART WD40_4 856 896 IPR001680 GO:0005515
Glsi11g0177 1447 ProSitePatterns Protein kinases ATP-binding region signature. 180 202 IPR017441 GO:0005524
Glsi11g0177 1447 SUPERFAMILY WD40 repeat-like 554 956 IPR036322 GO:0005515
Glsi11g0177 1447 SUPERFAMILY Protein kinase-like (PK-like) 156 448 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0177 Glsi-ChrGlsi11 1203790 1213704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0177 162 455 Receptor kinase-like Gene Family AT1G53420 41.584 9.15e-64 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi11g0177 BCAS3 8.1e-73 No_clan