Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0145 ATGAAGAACATTTTTAAGAAGCTTCACATAGGGAGCAACCACGACCCAAATCGATCCAATGAAACCCCGCCCCTCGTAACCTCATCATCCGATTTACGTGCGGGTCCCGTCCAGAATATCGTCACGGCTCTGCCTAGCCCTTCTTCTTCGTCATCTCCTTCCCCTGCAACTCTCCCAGCTGTCGGCGCTTCCAATCCCCTACCTGCTACGCCCAATTTTCAAGACTATTTTTCTTCCGAGGAGGAGTATCAGGTTCAGCTAGCTCTAGCCATCAGCGCTTCCAATTCGGAGTCCCCGGATGATCCTGAGAAGGATCAGATCCGAGCGGCAACACTACTGAGCTTAGGAGGTCTTCAAATTCATTCGAAAACGAATAAGGATCACGTCGCAGACGCGCTCTCTAGGCAATACTGGGAATACAATGTGCTTGAATATGAGGAGAAAGTAGCTGATGGTTTTTATGATGTATATGGACTCTGTAATGATGCAGCAATGCAAGGAAAAATGCCATCTCTGACAGATGTTGAAGCAAACCCTGGAAGTTCTAACTTTGAAGTTGTCATGGTTAATCGAACAATTGATCCTGTGCTGGATGAGCTGGTACAAATTGCCCATTGCGTTGCATTAGACTGCCCTGTCACTGAGGTTGGTGTTTTGGTACAAAGGCTTGCTGAACTCGTTACGGGGCATATGGGTGGCCCTGTAAAAGATGCTAATATTATATTGGCAAAATGGATGGAAAGAAGTACCGAGCTAAGGACATCTCTCCAAACAAGTGTGTTGCCTCTTGGCTCCATAAATATTGGGCTCTCCAGGCATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAATATAAAGATGCCTTGTAGACTGGTAAAAGGTAGTCATTATACTGGTGTTGAGGATGATGCTGTCAACATTATAAAGTTGGACGATGAAAGGGAGTTTTTGGTTGATCTTATGGCTGCACCTGGAACACTTATCCCAGCTGACTTAAGTGCAAAGGATACTGCCTTAAAGCAATACAATCCCAAGATTTTACCAAGTTTACAATCCACTAAGGAAACTGGTTTTCCTTACTCAAGGCTAATGCCATCTCATGGTGAAGGAAGTCATCAAAATTCTGCTAAAAAAGGTGGTTTGCCACCCTTTAATGAAAAACTGTATTTTGACAAGGCAGACATGTCTTCAAACTTGGGTTCGAGCAGAGCCACTAGTGTCAGTCCTAAAATGGCTGGTAGAGCAACTCCCAGCCAACTGGAAAATTTGCCCCCATCAACTGGCACTTCTCAGTACAAAGGGAATCGTGGAATGAATGCAATTTGTGATGGGACAAGACTCAATTTCAATGTTGTACCATATGGTCAGGATAGCCCAGACAACTCTAGGAGCCTTTTTGCAGATCTTAACCCATTCCAGATAAAAGGAACTGGCAGGACATCTGTACATAGCAATCCTTTTGGAAATAAGGCTCCTGAGCTTCAGGGTACTAGAAATAATGCTGTTTCTGGTCAACCCCCAGTACCATTGATGTGGAGAAATCATTATGCTTACAACGATGTCCCCAGGAAAATTAACCATGTTCCTAATGAATATAGCCCGTCTGTTTTAGTTTCTAATAGTTCTTCCATTGGTGATAAGATTGATCACTATAGTTCCCAATTATCATCTAGTTCTAATATAGATAAAGATGGAAATAGTCAAATTTTGATGCAACTGACTGGTTCAGCATCAGGACCTGGTGCAGATGAGCTGAACAGGTTTGAGGATCTCAATGCAGATTGTAACAAAGGGAATGTGGGAAGTTCTCAAAATGGCATGGTACATGTAGCTAAAGAATGCAAGAACAATGAAATTAATTTTCATGACCAGAGAAGGTTCACAGGCAACAGATTCCATGGGAGCAATTTGAAATTAAAGGACCCAGAGAGTCCTTGTTCATCAATTGATTCCTGCGCTATTGGGGTTGATCAAGTATTGGATGATGCAGATGTTGGTGAATGTGAAATTCCATGGGAGGATTTGATTATTGGTGACAGAATTGGTCTAGGTTCGTATGGCGAGGTATACCATGCTGACTGGAATGGAACAGAGGTTGCTGTGAAGAAGTTTTTGGATCAGGACTTTTCAGGTGCTGCATTAGCTGAATTCAGAAGAGAAGTTCGAATAATGCGTAGATTGCGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTTTCTTCCAAGAGGAAGCTTGTACAGAATTCTCCATCGTCCTAATTGTCAGATTGATGAGAAACAGAGAATAAAAATGGCTTTGGATGTGGCAAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCACCGAGATCTGAAGTCACCAAATCTTTTGGTTGATAATAACTGGAATGTCAAGGTGTGTGATTTTGGGCTATCACGCCTGAAGCACAACACATTTTTGTCATCTAAGTCAACCGCTGGAACGCCTGAATGGATGGCTCCTGAAGTTCTCCGCAATGAGCCCTCAAATGAGAAGTGTGACGTTTTTAGTTTTGGAGTCATCCTTTGGGAGCTTGCCACTCTCAGGTTGCCATGGAGTGGAATGAATCCTATGCAGGTTGTTGGTGCAGTAGGTTTCCAAAGTCGTCGCTTAGACATCCCCAAAGAAGTTGATCCTGTAGTTGCAAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGTCCCTCATTTGCACAGCTCACAGGGGCTCTAAAGCCCCTGCAGCGTTTAGTTATCCCATCTCATCAGGACCAGATGGCTTCACCCCTGCCACTGGAGATTTCTGTAAATTCTACCCCTTGA 2871 0.4357 MKNIFKKLHIGSNHDPNRSNETPPLVTSSSDLRAGPVQNIVTALPSPSSSSSPSPATLPAVGASNPLPATPNFQDYFSSEEEYQVQLALAISASNSESPDDPEKDQIRAATLLSLGGLQIHSKTNKDHVADALSRQYWEYNVLEYEEKVADGFYDVYGLCNDAAMQGKMPSLTDVEANPGSSNFEVVMVNRTIDPVLDELVQIAHCVALDCPVTEVGVLVQRLAELVTGHMGGPVKDANIILAKWMERSTELRTSLQTSVLPLGSINIGLSRHRALLFKVLADNIKMPCRLVKGSHYTGVEDDAVNIIKLDDEREFLVDLMAAPGTLIPADLSAKDTALKQYNPKILPSLQSTKETGFPYSRLMPSHGEGSHQNSAKKGGLPPFNEKLYFDKADMSSNLGSSRATSVSPKMAGRATPSQLENLPPSTGTSQYKGNRGMNAICDGTRLNFNVVPYGQDSPDNSRSLFADLNPFQIKGTGRTSVHSNPFGNKAPELQGTRNNAVSGQPPVPLMWRNHYAYNDVPRKINHVPNEYSPSVLVSNSSSIGDKIDHYSSQLSSSSNIDKDGNSQILMQLTGSASGPGADELNRFEDLNADCNKGNVGSSQNGMVHVAKECKNNEINFHDQRRFTGNRFHGSNLKLKDPESPCSSIDSCAIGVDQVLDDADVGECEIPWEDLIIGDRIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFRREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKQRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDNNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVFSFGVILWELATLRLPWSGMNPMQVVGAVGFQSRRLDIPKEVDPVVARIIWECWQQDPNLRPSFAQLTGALKPLQRLVIPSHQDQMASPLPLEISVNSTP 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0145 956 SMART serkin_6 675 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0145 956 ProSiteProfiles Protein kinase domain profile. 675 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0145 956 PRINTS Tyrosine kinase catalytic domain signature 788 806 IPR001245 GO:0004672|GO:0006468
Glsi11g0145 956 PRINTS Tyrosine kinase catalytic domain signature 835 845 IPR001245 GO:0004672|GO:0006468
Glsi11g0145 956 PRINTS Tyrosine kinase catalytic domain signature 854 876 IPR001245 GO:0004672|GO:0006468
Glsi11g0145 956 PRINTS Tyrosine kinase catalytic domain signature 749 762 IPR001245 GO:0004672|GO:0006468
Glsi11g0145 956 PRINTS Tyrosine kinase catalytic domain signature 898 920 IPR001245 GO:0004672|GO:0006468
Glsi11g0145 956 MobiDBLite consensus disorder prediction 15 59 - -
Glsi11g0145 956 Gene3D Transferase(Phosphotransferase) domain 1 754 936 - -
Glsi11g0145 956 Gene3D Phosphorylase Kinase; domain 1 668 752 - -
Glsi11g0145 956 MobiDBLite consensus disorder prediction 477 500 - -
Glsi11g0145 956 FunFam Serine/threonine-protein kinase isoform 1 666 753 - -
Glsi11g0145 956 CDD STKc_MAP3K-like 681 924 - -
Glsi11g0145 956 SUPERFAMILY Protein kinase-like (PK-like) 666 946 IPR011009 -
Glsi11g0145 956 MobiDBLite consensus disorder prediction 9 66 - -
Glsi11g0145 956 MobiDBLite consensus disorder prediction 399 436 - -
Glsi11g0145 956 ProSitePatterns Protein kinases ATP-binding region signature. 681 703 IPR017441 GO:0005524
Glsi11g0145 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Glsi11g0145 956 Pfam Protein tyrosine and serine/threonine kinase 677 925 IPR001245 GO:0004672|GO:0006468
Glsi11g0145 956 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 191 931 - -
Glsi11g0145 956 FunFam PAS domain-containing protein tyrosine kinase family protein 753 944 - -
Glsi11g0145 956 Pfam Ethylene-responsive protein kinase Le-CTR1 130 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0145 Glsi-ChrGlsi11 1005373 1013859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0145 1 911 MAP Kinase Kinase Kinase AT1G08720 55.344 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Glsi11g0145 PK_Tyr_Ser-Thr 2.7e-62 CL0016