LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g0131	ATGAATGGTGTCACACTCCTCGAACCAGATTACTCTGAGTTTGTCGAAGTTGATCCAACTGGCAGATATGGCAGATACAACGAAATCCTCGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGAATTGAAGTTGCCTGGAACCAAGTCAAGCTGTATGATTTCCTGCAAAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAAAAATATCATGAAATTTTACACGTCTTGGGTCGATACTGCTAATAGAAATATCAACTTCGTGACTGAGATGTTCACTTCTGGGACTCTCAGACAGTATAGGCTAAAGCACAAGAGAGTAAACATCAGAGCAGTAAAGCATTGGTGTAGACAGATCCTGAGAGGACTCCTCTATCTTCATAGCCATGACCCACCTGTGATCCACAGAGATCTCAAATGTGACAATATTTTTGTTAATGGACACCAAGGGGAGGTCAAGATTGGGGATCTTGGTCTAGCAGCAATTCTCCGGAAATCCCATGCTGCTCATTGTGTCGGAACGCCTGAATTCATGGCCCCAGAAGTTTATGAAGAGGCATATAATGAATTAGTTGATATATATTCCTTTGGTATGTGCTTACTTGAAATGGTCACATTTGAATATCCTTATAGTGAATGCACGCATCCAGCACAAATCTACAAGAAAGTTATTTCAGGGAAAAAACCAGATGCTTTATATAAAGTTAAGGATCCAGAAGTGCGACAATTCGTTGAGAAATGCTTGGCAACGGTGTCTCTAAGGCTTTCTGCAAGGGAACTTCTAGATGACCCTTTTCTCCATATTGATGATTACGAATATGATTTAACACCAGTAGACAGCAGGGAATTTGGTGACTTGAGTCCATTTTTTGATCTTCGTCAAAGTTATAGTAACATTAGTAACGAATACTCAAATGGTTTTGGCTACGAAGCTCCAGAAGACTGGTGTTCTCATCCTGTTGAGATTGAACCTAGTGGAATTGAACTTTTTGAGTACCAAGATGATGAACTGTCTGAAGATGTTGACATAAGCATCAAAGGAAAGAGGCAACATGATGGTGGCATCTTTTTGAGACTAAGAATTTCAGACAAAGAAGGTCGTATTCGAAATATCTATTTCCCATTTGACGTAGAGACAGACACAGCATTAAGTGTGGCAACGGAAATGGTTGCAGAACTTGATATTACTGATCAGGATGTAACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGGCCAGGACCAGGAATTGAGGAAACTCCTCGCTTTGCAAATCAAAGTTTCTGTCACAACTGTGCATCTAATCATACTTCTAGTGGTTCCCTTATGGATTTTCTGTCACATAATTCAGGCACCAAAGACTCTCAATTTCTTCAGTGCTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACGTTCCAGTCTGAGGAGTATGACAATCATGTTAGGGAGGATGCACCTAACTTATCAAGCCAATCAGACTGCTTGCAGTATCCGGAGTTATGGAATCAGCATGAAAGTCGGGAACTTAGTCCGGTGGAGTCTGAACAAAGCCATTCTGATGAACAATATGTACAGTTAGATAAATCATTATCAGCTGAAGATGAGAGTCAGGATGTTTGGGAAAACAAATTTGCACCCAATGTAGGAAATTCCCAACGAAATTTATCAGGAACCCATTATTTTACTACAATCCATTCGTTATATTGTGACCTGGAGGATGAATATGAGAAAGAGATCCAACAGGAGCTCAGATGGCTCAGAGCAAAGTACCAAATGGAGTTAAGGGAACTTAGGGATCGACAGCTTGGGGTAATGGCAAAATCTTCACTTAACAGAAAGCACAAAACAGAATGTGGGGTAACGTCACCTTCACTGACAGACCCATTGAGAGGAGGGAACAATGGGATTCAATTGAATCCCTTTGCTAATAACTGGCATTGTGGTTCTAGTTGCCATTCTCATGTCAATAAGTGCTGCCCCAATTTGGACACCCAAAGGGACCGAAATTGTGAGGCGACGGATTCCCCTGGAGAAGGTATGGTTACTGCGAAGAGTTTTTACACTGGGTCATTGCTTCCCCACTCTTTACACAGGACCGTTTCCCTCCCAGTTGATGCAGTTAATATATAA	2211	0.4152	MNGVTLLEPDYSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGHQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCLLEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLSARELLDDPFLHIDDYEYDLTPVDSREFGDLSPFFDLRQSYSNISNEYSNGFGYEAPEDWCSHPVEIEPSGIELFEYQDDELSEDVDISIKGKRQHDGGIFLRLRISDKEGRIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFANQSFCHNCASNHTSSGSLMDFLSHNSGTKDSQFLQCCRHGCASMHGRFEEITFQSEEYDNHVREDAPNLSSQSDCLQYPELWNQHESRELSPVESEQSHSDEQYVQLDKSLSAEDESQDVWENKFAPNVGNSQRNLSGTHYFTTIHSLYCDLEDEYEKEIQQELRWLRAKYQMELRELRDRQLGVMAKSSLNRKHKTECGVTSPSLTDPLRGGNNGIQLNPFANNWHCGSSCHSHVNKCCPNLDTQRDRNCEATDSPGEGMVTAKSFYTGSLLPHSLHRTVSLPVDAVNI	736

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g0131	736	Pfam	Protein kinase domain	27	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g0131	736	FunFam	probable serine/threonine-protein kinase WNK9	368	452	-	-
	Glsi11g0131	736	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	12	642	-	-
	Glsi11g0131	736	FunFam	Probable serine/threonine-protein kinase WNK1	9	105	-	-
	Glsi11g0131	736	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	371	425	IPR024678	GO:0004674\|GO:0005524
	Glsi11g0131	736	Coils	Coil	607	627	-	-
	Glsi11g0131	736	CDD	STKc_WNK	22	281	-	-
	Glsi11g0131	736	MobiDBLite	consensus disorder prediction	640	659	-	-
	Glsi11g0131	736	SMART	serkin_6	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g0131	736	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Glsi11g0131	736	Gene3D	Transferase(Phosphotransferase) domain 1	107	286	-	-
	Glsi11g0131	736	ProSiteProfiles	Protein kinase domain profile.	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g0131	736	FunFam	probable serine/threonine-protein kinase WNK9	107	286	-	-
	Glsi11g0131	736	Gene3D	-	368	435	-	-
	Glsi11g0131	736	SUPERFAMILY	Protein kinase-like (PK-like)	27	282	IPR011009	-
	Glsi11g0131	736	MobiDBLite	consensus disorder prediction	642	659	-	-
	Glsi11g0131	736	Gene3D	Phosphorylase Kinase; domain 1	9	105	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g0131	Glsi-ChrGlsi11	886730	889780	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g0131	1	506	MAP Kinase Kinase Kinase	AT3G22420	57.348	0.0	594

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Glsi11g0131		Pkinase	4.5e-49	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi11g0131	11	886730	889780	Glsi11g0131	11	886730	889780	CCT
	Glsi11g0131	11	886730	889780	Glsi11g0131	11	886730	889780	ECH