Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0121 ATGTTCGACGGAGTAGCAGAGCAGTTCCACCAATTGATAGCACCAACAACCACACTTCCTCTTCACTCATCCTTCCCATCACCAACCCTTAATAATACCTTCCCTCCTTTGGATCCTTACGACCCTTCTCCTCAGTTGCCCCTTTCAGTCCCACCCAATCTCTTCCACCCTGCATTGCACCACCACAGACATGAAGATCAGAACGAAGAAAGCAGCACGCTCCCAATGGACTTGCAGATTGATTCCTGGACTAACAACGAAGTGCTTGCGCTGTTCAGGATCAGATCTTGCATGGAAACTCGGTTCCCAGAGCTCACTTGGGAGCATGTTTCAAGGAAGTTAGCAGAGCTTGGATTCACCAAGAGCCCAGACAAGTGCAAGGACAAGTTTGAAGAAGAAAGTAGATACCTGAACAACATCCAGAATTACCGGTCTATTAGTGAGCTGGACGAGCTTTACCAAGGAGATCACCAAAATCCATTTGAAGACCACTCAAGAAATGACGGGGAAAGTGAAAAAAGGGTGGAAAAATCAAAGCACAGGAAGAGAAAGCGACACAGCAAGTTTGAGTTGTTCAGGGGTTTTTGTGAGAGCATTGTGAACAAGATGATGGCTCAACAAGAAGAAATGCACAATAAGGTTCTGGAGGATATGCTGAAAAGAGATGAAGACAAGTTTGCGAGGGAGGAAGCTTGGAAGAAGCAAGAGCTTGATAGGATTAACAGGGAGCTTGAAATTATGGCAAAAGAGCAGGCTATTGCGGGTAATAGACAGGCCACCATTATTGAATTCTTGAACAAGTTTGCAGCAAGTTCAATTCCAAATTCCCCAACGTTGCAGTTGCACTTACAAAACCCTAACCCCTCTGCTGATCAAGCGGATCAAAACCCTAGTTCAAGCAATAATGCACAAGTTGCATCATCAGTTTGGAGTGAGAGAGATGATGTTGGAAGAAGATGGCCGAGAGAGCAAGTGCTGGCACTGATAAAGCTGAGGTGCAGTTTGAATAACAGTAATGAAGACAAGGAGGGAAACAGGGGTCCTCTATGGGAGAGAATATCACAAGGGATGTGGGAGTTGGGTTATAAGAGAAGTGCCAAGAGGTGCAAAGAAAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTCGGTAAGAAGAGGTCCCTTGACTCCAGAACCTGTCCCTACTTCCATCAACTCACCACTTTGTATACTCAAGGAAAACTCATTCCACAGACGTCTGAGAAGGTGCAAATCCAAGCTCAGTCTTCTCAACTGCACGACACTTTTATGCTACCACCTGCTTTGGATTTTGAGCAATATTTGTGA 1338 0.4499 MFDGVAEQFHQLIAPTTTLPLHSSFPSPTLNNTFPPLDPYDPSPQLPLSVPPNLFHPALHHHRHEDQNEESSTLPMDLQIDSWTNNEVLALFRIRSCMETRFPELTWEHVSRKLAELGFTKSPDKCKDKFEEESRYLNNIQNYRSISELDELYQGDHQNPFEDHSRNDGESEKRVEKSKHRKRKRHSKFELFRGFCESIVNKMMAQQEEMHNKVLEDMLKRDEDKFAREEAWKKQELDRINRELEIMAKEQAIAGNRQATIIEFLNKFAASSIPNSPTLQLHLQNPNPSADQADQNPSSSNNAQVASSVWSERDDVGRRWPREQVLALIKLRCSLNNSNEDKEGNRGPLWERISQGMWELGYKRSAKRCKEKWENINKYFRKTKDVGKKRSLDSRTCPYFHQLTTLYTQGKLIPQTSEKVQIQAQSSQLHDTFMLPPALDFEQYL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0121 445 FunFam Trihelix transcription factor GT-2 83 139 - -
Glsi11g0121 445 MobiDBLite consensus disorder prediction 156 176 - -
Glsi11g0121 445 Gene3D - 320 382 - -
Glsi11g0121 445 Gene3D - 83 138 - -
Glsi11g0121 445 MobiDBLite consensus disorder prediction 156 182 - -
Glsi11g0121 445 MobiDBLite consensus disorder prediction 277 310 - -
Glsi11g0121 445 FunFam Trihelix transcription factor GT-2 320 382 - -
Glsi11g0121 445 Pfam Myb/SANT-like DNA-binding domain 318 405 IPR044822 -
Glsi11g0121 445 Pfam Myb/SANT-like DNA-binding domain 81 140 IPR044822 -
Glsi11g0121 445 ProSiteProfiles Myb-like domain profile. 319 377 IPR001005 -
Glsi11g0121 445 MobiDBLite consensus disorder prediction 277 309 - -
Glsi11g0121 445 CDD GT1 318 384 - -
Glsi11g0121 445 PANTHER FI21293P1 65 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0121 Glsi-ChrGlsi11 821506 823028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0121 189 409 Trihelix Transcription Factor Family AT5G28300 47.037 4.78e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi11g0121 Myb_DNA-bind_4 9.2e-19 CL0123