Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0120 ATGTGCTCTTCTGCATTTCTCTATGCACATACGTCCACCGACCACAGAGAGGAAAATCTTATTCTTGATCACATGGAGCAGTATGAATTACTTGAGCAAATTGGAAAAGGTGCTTTTGGCTCTGCTCTTCTTGTGAGGCATAAGCATGAGAAGAAAAAATATGTACTGAAGAAAATTCGCCTTGCTCGCCAAACGGAGCGATCTCGTAGATCTGCACGTCAGGAGATGGAGCTCATCTCTAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCGGAGGCTATAAAGAAGGCTAATGGTGTTCTTTTTCCTGAGGAGAAACTTTGTAAATGGCTTGTTCAACTTCTTATGGCGCTTGACTACTTGCACATGAACCATATTCTTCACCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCAAGACATACGCCTTGGTGATTTTGGACTTGCCAAGATGTTGACTTCAGATGATCTTGCTTCCTCTGTTGTGGGAACTCCCAGTTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACAGCTCATAAGCCTTCATTTAAAGCATTTGATATACAATCACTAATCAACAAGATTAACAAGTCCATAGTGGCTCCACTGCCAACAAAGTATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCTGAGCTTAGACCTAGTGCTGCAGATCTGCTTGGGCACCCGCATCTTCAATCGTATGCTCTCAAGATCCATCTCAAAATCAATTGCCCCAGGCGAGGTACATTACCAGTTCATTGGCCAGAATCGAACTACATGAAGAAAACTAGGTTTTTGGAGCCAGATGATATTTCCATATATAGGGATAAGCTGCATTCTTTCAGCAATGACTGGACTCCTCATCCTAGCATATCTGTGGCCGAGCAGGATTCTGTATGCTCTGCCCTAGAAATAGATTGTACCGCAGATAATTTGAATCAAAGGTTAGCAGAACTGTGTGTCGTAGATAGCCTTGAAGTGAAGTCAATCCGTAAGCCTGTTGTTTCCAGGACTTCAAGTCTTGCCAAGACTCCAAGACTTACCTCATCTAAAGCTTCTGCTACCACCCCTAAGAAATCAATGGAGCCCTCAAAGAAACGCGAGTCGCTTCCTGCTTTACGCAATGCCAGACAATCAGTCTATTCAACTCGCAGAGCATCGTTTCCGTTGCGTACAGGAGTTGCCATTCAACAGTCTCCTCAGAGGCCTGCTATTGGTTTACTTGGCGATATAAAATCGCCAGATATTTCAGTTAACTCTCCCAGAATTGATAGGATAGCTGAATTCCCGTTAGCATCATATGAGGATCCACTGCTTCTCATCAATAGAACATCTACCTCTGCACAGGGTTCCTCGGGTTCCCCACCATGTGGTGATCGTTCAATCATGAAAGATAAATGCACGGTTCAGGTATGTGATAGAGCCTCTGTCAGGCCTTATTTGACAGATGATTGGCAGGGAATCAAGCACACCATGTTTCAGGGAAATGCTGAGGATAAAAGCGTCTCCTCTAATCAAAATGCAACTGCTGGTGCATCAAGCCGTACCTCTTCAGACTTGCGCCGCCGGCAGTTTGACACTTCATCATACCAACAAAGAGCTGAAGCCTTGGAAGGGCTGCTTGAATTTAGTGCAAGATTGCTACAACATGAAAGGTATAACGAACTTGGGGTTTTGTTGAAACCATTTGGGCCAGGGAAGGTCTCCCCGAGGGAAACTGCAATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTCTCAACCGGGAAGAATCCCTGTAG 1932 0.4363 MCSSAFLYAHTSTDHREENLILDHMEQYELLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSARQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPSFKAFDIQSLINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAADLLGHPHLQSYALKIHLKINCPRRGTLPVHWPESNYMKKTRFLEPDDISIYRDKLHSFSNDWTPHPSISVAEQDSVCSALEIDCTADNLNQRLAELCVVDSLEVKSIRKPVVSRTSSLAKTPRLTSSKASATTPKKSMEPSKKRESLPALRNARQSVYSTRRASFPLRTGVAIQQSPQRPAIGLLGDIKSPDISVNSPRIDRIAEFPLASYEDPLLLINRTSTSAQGSSGSPPCGDRSIMKDKCTVQVCDRASVRPYLTDDWQGIKHTMFQGNAEDKSVSSNQNATAGASSRTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQHERYNELGVLLKPFGPGKVSPRETAIWLSKSFKENTLNREESL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0120 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Glsi11g0120 643 Gene3D Transferase(Phosphotransferase) domain 1 108 295 - -
Glsi11g0120 643 MobiDBLite consensus disorder prediction 389 410 - -
Glsi11g0120 643 Gene3D Phosphorylase Kinase; domain 1 8 107 - -
Glsi11g0120 643 Pfam Protein kinase domain 28 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0120 643 SMART serkin_6 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0120 643 MobiDBLite consensus disorder prediction 389 431 - -
Glsi11g0120 643 CDD STKc_Nek 27 282 - -
Glsi11g0120 643 SUPERFAMILY Protein kinase-like (PK-like) 25 342 IPR011009 -
Glsi11g0120 643 FunFam Serine/threonine-protein kinase Nek2 25 107 - -
Glsi11g0120 643 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0120 643 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Glsi11g0120 643 FunFam Serine/threonine-protein kinase Nek2 108 298 - -
Glsi11g0120 643 MobiDBLite consensus disorder prediction 547 574 - -
Glsi11g0120 643 MobiDBLite consensus disorder prediction 547 569 - -
Glsi11g0120 643 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 25 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0120 Glsi-ChrGlsi11 813436 820575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0120 34 284 MAP Kinase Kinase Kinase AT1G53570 31.641 5.15e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Glsi11g0120 Pkinase 8.7e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0120 11 813436 820575 Glsi11g0120 11 813436 820575 CCT
Glsi11g0120 11 813436 820575 Glsi11g0120 11 813436 820575 ECH