Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0112 ATGGATAGGGTGTTTTCGGCCGATGATATTCCCGACCAGTTTTGGTCGCCGCCCCTGCCAACCCCTACCCCTACCCCTCAATCCTCCAAGATGAACCGCAGCGCTTCCGAGTGGGCCTTCGAGCGCTTCCTCCAGGAAACTTCTGTTCCCTCCCCAACCTCTCCTCCTTCTTCTTCCTTCCCTCCTGCCCCAAACCCCGACCTTCCCCTTCCCGTCAAACATCAGGATCCACCCCACAACAATGCTCCTGCTCCTAACCTTCCCGTTGATTCCGAAGAATATCAGGCTTTCCTCAAGACCAAACTCAACCTCGCCTGCGCTGCCGTCGCCTTCTCTCGTGGATCTTTAAATAAATCTCAAGATTCAGCTACTTTTCTTGACAGTGGGTCACAGGCTTCCAATTCTCAAGTTGGATCTCAGGCTACTTTTAAAGGATCTGGCCCATCTGGAAGTGATCCATCTAAATTACTAGATAAAGATGCCAAAGCACCAGTTGGGATTCCTTCCTTGCCTGCCATGCAAAACAAACCTGCAGTTGCGAACAAGGCAACAACAAGTGGATCATCAAGGGAACAGTCAGATGATGAGGAAGTTGAGGGAGAGACTGACATGACTGAAAATATGGACCCTGCAGATGTGAAACGAGTAAGGAGGATGCTTTCCAATAGGGAGTCAGCCAGACGCTCAAGAAGAAGAAAGCAGGCTCATTTAACTGATCTTGAGACACAGGTTTCCCAATTAAGAATTGAAAATTCATCCTTGTTAAAGCGCCTTACTGATGTAAGCCAGAAGTACAGTGAATCTGGCGTTGACAACAGAGTATTAAAAGCTGACATTGAAACACTAAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACTGGATTGAACCCAATGTTTCATGCCATGTCAGAGATATCATCAATGGGCATGCCATTATTTGATGGAAGCCCTTCTGACACGTCAGCAGATGCCGCTGTTCCTGTGCAAGATGATCCAAATCATCACTTTTATCAACCCACTTCTAATAATACTTTGTCCAATCATGATATGAGAGTCAATAATGTATTGGGAGACGTTTCTTCAAATGAAAATGGACAGCAGAACGCTGCAGCAGTGGTAGCTGGGAACAAGATAGGACGAACAGCTTCCCTTCAGAGGGTAGCTAGCTTGGAACATCTTCAGAAGAGAATTAGTGGTGGGGCAGATTCATGTGGACTTCCTTCCAATGGAGAGCAGTCAAGGATTGTTTGA 1263 0.4671 MDRVFSADDIPDQFWSPPLPTPTPTPQSSKMNRSASEWAFERFLQETSVPSPTSPPSSSFPPAPNPDLPLPVKHQDPPHNNAPAPNLPVDSEEYQAFLKTKLNLACAAVAFSRGSLNKSQDSATFLDSGSQASNSQVGSQATFKGSGPSGSDPSKLLDKDAKAPVGIPSLPAMQNKPAVANKATTSGSSREQSDDEEVEGETDMTENMDPADVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRIENSSLLKRLTDVSQKYSESGVDNRVLKADIETLRAKVKMAEETVKRITGLNPMFHAMSEISSMGMPLFDGSPSDTSADAAVPVQDDPNHHFYQPTSNNTLSNHDMRVNNVLGDVSSNENGQQNAAAVVAGNKIGRTASLQRVASLEHLQKRISGGADSCGLPSNGEQSRIV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0112 420 PANTHER BASIC LEUCINE ZIPPER 63 1 405 - -
Glsi11g0112 420 CDD bZIP_plant_GBF1 215 266 IPR045314 GO:0003700|GO:0006355
Glsi11g0112 420 Gene3D - 213 268 - -
Glsi11g0112 420 Coils Coil 230 257 - -
Glsi11g0112 420 MobiDBLite consensus disorder prediction 117 239 - -
Glsi11g0112 420 MobiDBLite consensus disorder prediction 1 88 - -
Glsi11g0112 420 FunFam BZIP transcription factor 212 263 - -
Glsi11g0112 420 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 212 267 IPR004827 GO:0003700|GO:0006355
Glsi11g0112 420 Pfam bZIP transcription factor 213 265 IPR004827 GO:0003700|GO:0006355
Glsi11g0112 420 MobiDBLite consensus disorder prediction 207 223 - -
Glsi11g0112 420 Pfam Basic leucine-zipper C terminal 281 405 IPR020983 -
Glsi11g0112 420 Coils Coil 272 299 - -
Glsi11g0112 420 MobiDBLite consensus disorder prediction 54 84 - -
Glsi11g0112 420 SUPERFAMILY Leucine zipper domain 213 264 IPR046347 GO:0003700|GO:0006355
Glsi11g0112 420 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 217 232 IPR004827 GO:0003700|GO:0006355
Glsi11g0112 420 SMART brlzneu 210 274 IPR004827 GO:0003700|GO:0006355
Glsi11g0112 420 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0112 Glsi-ChrGlsi11 780174 784176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0112 1 360 bZIP Transcription Factor Family AT4G02640 39.898 3.61e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi11g0112 bZIP_C 1.9e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0112 11 780174 784176 Glsi11g0112 11 780174 784176 CCT
Glsi11g0112 11 780174 784176 Glsi11g0112 11 780174 784176 ECH