Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi11g0106 | ATGGCGAGCCAGGTGGTGAAAGTAAAGAGGGAGACTTTACAAGCATGCATGACATGCCCTCTTTGTCATAAGCTGTTGAAAGATGCCACAACCATATCTATATGCCTTCATACGTTTTGCAGGAAGTGCATATACGAGAAACTCTCAGATGAGGAGATGGATTCCTGTCCTGTATGCAATATCGATTTAGGCTGTCTTCCAGTGGAAAAACTCAGGCCAGACCACAGTCTGCAAGATATTAGGGTAAAAATATTCCCATTTAAAAGAAGGAAGAACAAAGGCCCAGAAATTGTGCCTTCAATATCCCTGCCAGTAAAACGGAAGGAAAGATCACTTTCATCATTGGCGGTTAGTGCTCCCAAAGTTTCAATACAGACTGCCTTTACAGGAAAGAGAACGAAAGCCGGTACAAGAAAGGCTGCTGCTTTACGTGGATGCAATTTTAATCTTGAACCCATAAAAAACGAAGAAACATCTGCTGAGGATAATCCGGATTCTTCCATGGCTGAGTCTTCTAAGAAGCATAGGCCCAATGAAGGGAAGTTTGACTTGTGGACACCTTTGAATTGTCTTGTCGAAGCTGCCAACAGAACAAAGTCCACCAAGTCAAATTCACAAGGAATTGCTCTTGCCAAATTAGAGTCTCCAACTACTCCTCACGGGGGACTAGAAATGCCTGAAATCACTCCCAAATCGGAGCCCACTTCTGCCACCCAGAGTGAATTACATATGCCTAAAACCAAAAACAAGGATAATGGACATGAAACAAAATTTGGCGATGACAAGGATTTAAACATCCTTCCTTCAGGACCAGTGAAGCGGAGAAGGATGTGTCCTGCTGGTCAGAAAAAAGCAGTAGCGTCAGAGATGTCTGCATCATCCCAAGTCGTGCTAGATGCAACAGTGGGCAGGTGCAACAGAAACAACAATCCTATTTGGTTTTCATTAGTTGCTTCAGAAGATCAGAAAGGAGATGTTCCCTTGCCACAGATATCTGCATGCTACTTAAGAATAAAGGATGGTAATGTACCCGTCTTGTTTATTCAAAAGTACCTCGTAAAGAAACTTAATCTTGCCAGCGAATCAGAGGTGGAAATAATGTGTCGGGGTCAGCCAGTGCTACCAACAGTGCAACTGCATAACTTAGTAGATCTGTGGTTCAGGACAGCATCAACCTCAAAAAAGATACCAGCATCTGTCGGCTCCTCCGCTAAGGACTTTGTCATGGTTTTATCTTATTGTCGAAAGGCCTTAGCTCCTTGA | 1263 | 0.4339 | MASQVVKVKRETLQACMTCPLCHKLLKDATTISICLHTFCRKCIYEKLSDEEMDSCPVCNIDLGCLPVEKLRPDHSLQDIRVKIFPFKRRKNKGPEIVPSISLPVKRKERSLSSLAVSAPKVSIQTAFTGKRTKAGTRKAAALRGCNFNLEPIKNEETSAEDNPDSSMAESSKKHRPNEGKFDLWTPLNCLVEAANRTKSTKSNSQGIALAKLESPTTPHGGLEMPEITPKSEPTSATQSELHMPKTKNKDNGHETKFGDDKDLNILPSGPVKRRRMCPAGQKKAVASEMSASSQVVLDATVGRCNRNNNPIWFSLVASEDQKGDVPLPQISACYLRIKDGNVPVLFIQKYLVKKLNLASESEVEIMCRGQPVLPTVQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALAP | 420 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi11g0106 | 420 | ProSitePatterns | Zinc finger RING-type signature. | 35 | 44 | IPR017907 | - | |
| Glsi11g0106 | 420 | MobiDBLite | consensus disorder prediction | 214 | 277 | - | - | |
| Glsi11g0106 | 420 | SMART | ring_2 | 19 | 59 | IPR001841 | - | |
| Glsi11g0106 | 420 | SUPERFAMILY | RING/U-box | 12 | 80 | - | - | |
| Glsi11g0106 | 420 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 1 | 417 | IPR044807 | GO:0004842 | |
| Glsi11g0106 | 420 | MobiDBLite | consensus disorder prediction | 244 | 262 | - | - | |
| Glsi11g0106 | 420 | ProSiteProfiles | Zinc finger RING-type profile. | 19 | 60 | IPR001841 | - | |
| Glsi11g0106 | 420 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 108 | IPR013083 | - | |
| Glsi11g0106 | 420 | Gene3D | - | 292 | 397 | - | - | |
| Glsi11g0106 | 420 | CDD | RING-HC_PCGF | 17 | 60 | - | - | |
| Glsi11g0106 | 420 | MobiDBLite | consensus disorder prediction | 155 | 181 | - | - | |
| Glsi11g0106 | 420 | Pfam | Zinc finger, C3HC4 type (RING finger) | 19 | 59 | - | - | |
| Glsi11g0106 | 420 | MobiDBLite | consensus disorder prediction | 152 | 181 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi11g0106 | Glsi-ChrGlsi11 | 758934 | 763073 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi11g0106 | 5 | 339 | C3H Transcription Factor Family | AT2G30580 | 43.526 | 9.42e-86 | 263 |