Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0087 ATGGCTCCCAATCCAAGAGTCGTCAAGGCCTTTAGAGCTATGAGGGCATTGGGAATTTCTCATGAAGAGGTGAAACCAGTGTTGAAAGAGATGTTAAGAGTGTATGATAGCAACTGGGAACTTATTGAAGAAGATAATTATCGGACACTTATAGATGCTTATTTCGAGCTTAAGGAAGATAAGCGAGCAGATTGTAAGAGAAAAGCTCCCATCAGTCATCATGGTGGGGAAAGACAAACTCAGAAATTGTTCTTGGTAGATGAAGATGACCATCTTTCTTTATCCACGGGCAACTCAAGCCAAATATTGTCTAAAGAGATTGAAACACCTTTTGGACAAGAAATCTTTGACTCATCTTTACCTTTATTGAGAAATATAAAGCCTAAAATTAGTTCTCAAGCATTGCAAACAAGGTTTAGTGAGGTAGAAATATCAAAGCTACCTTGCATGGCAGGTACAGATAGAAAATCAAGTCCTGAGAAGGCATTGTATGCAGGGCATTGCGAGGAGCCAACTAATAAGCCTAGACCTGCTCATACCCAAAGCAAAAATATACTAAGTAATCGTTGTAAGAAAGCTATAATAAAACCAAAAACCGAGCATCATAAGTTACATCTTGGACCCATTTCAACAAGTTATAGAGGTTCATGTGAGGCTTCAACTGGAAATTGCTGTGTCAAGTTGCTGTCATCTCAGTATCTGGATATGAACAGTAAAGATGATAATTCAGCACATAATAACAACCCCACAAGCTGTAAGTCAAATATTGATATTGCCTCTTCACGTACTGGAGAAGTGAAAATTTCTCTTAACTGTGAATATGCCCTTGGACAACCAAACTTCTATATTCCTAACTTAGATGCTGTTATGAAGTTCATGGAGGAGAAGTACCTCAAATCTTGCGATATGGTTGGGCCTCAATTTTCTATGGTAATGTTATTAAATGATTTATGTGAGAGTTACCTAAAATTTGGGATGAATATGAATCAAAAGGGTTCACATCCTGAGTATATCAATGTGAACAAATTAACATTGATGCAACAAGCTGTTGCTCAAGATGAGAAGCCCTTTCATTTTCTCAGCGACATAACAAAAGGGTCAGAAAAGGTGAATATATCATTGGTAGATGAATTTGGCAATGAGGAATTGCCAAAGTTTAATTACATACCATATAATCTAATATATCAGAGTGCTAATGTAAATATTTCACTGGCTCGCATTGCGGACGAGGGTTGCTGTTCAGATTGTTCAGGAAACTGTCTTTCTGCATCATTACCTTGCGCATGTGCTCAAGAAACTGGGGGGGAGTTTGCTTACACTCTACAAGGTTTGTTGAAAGAAGAATTTCTGACAGCTTGCATGTCTATGAAAAAGGAACCTCAAGATCATCATTTTGTGTACTGTCAAGAGTGCCCACTGGAGAGGTCTAAGAATGAGTACATGCCTGAACTATGCAAGGGGCATCTGGTTAGGAAATTCATTAAGGAATGTTGGAGGAAATGTGGATGTGACATGCAGTGCGGAAATCGTATAGTGTTTTTTACTCGTGAAGGAAAGGGCTGGGGTCTTAGAACACTAGAAGATTTGCCCAAGGGATCCTTTGTATGTGAATATGTTGGAGAAATATTAACCAACATGGAGTTATATGAAAGGACTGTGCACAATAGTGGCAATGACAGACATACTTATCCTGTAACCCTTGATGCAGACTGGGGCTCTGAAGGGGTGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATAAATCATAGATGCTATGACGCAAATCTGATAGACATTCCCATTGAAGTGGAGACTCCAGATCGCCATTATTATCATCTTGCCTTTTTTACTAACAGGAAAGTGAATGCACATGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCATGACCATCCTATTAAAGCATTCCGATGCTGTTGTGGAAGTGCTTGCTGCCGTGATAAGAAACGGAAAGGTCAGTTAGATAATCTTAGTCTTCCTATACAGCATGTGAGGATTTTAGTCGGTGAAGCGATCCCTACTACAACCATTGGAGCAGCTGGAGCCGAAGGTACTGGCTACTAA 2121 0.3927 MAPNPRVVKAFRAMRALGISHEEVKPVLKEMLRVYDSNWELIEEDNYRTLIDAYFELKEDKRADCKRKAPISHHGGERQTQKLFLVDEDDHLSLSTGNSSQILSKEIETPFGQEIFDSSLPLLRNIKPKISSQALQTRFSEVEISKLPCMAGTDRKSSPEKALYAGHCEEPTNKPRPAHTQSKNILSNRCKKAIIKPKTEHHKLHLGPISTSYRGSCEASTGNCCVKLLSSQYLDMNSKDDNSAHNNNPTSCKSNIDIASSRTGEVKISLNCEYALGQPNFYIPNLDAVMKFMEEKYLKSCDMVGPQFSMVMLLNDLCESYLKFGMNMNQKGSHPEYINVNKLTLMQQAVAQDEKPFHFLSDITKGSEKVNISLVDEFGNEELPKFNYIPYNLIYQSANVNISLARIADEGCCSDCSGNCLSASLPCACAQETGGEFAYTLQGLLKEEFLTACMSMKKEPQDHHFVYCQECPLERSKNEYMPELCKGHLVRKFIKECWRKCGCDMQCGNRIVFFTREGKGWGLRTLEDLPKGSFVCEYVGEILTNMELYERTVHNSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCYDANLIDIPIEVETPDRHYYHLAFFTNRKVNAHEELTWDYGIDFDDHDHPIKAFRCCCGSACCRDKKRKGQLDNLSLPIQHVRILVGEAIPTTTIGAAGAEGTGY 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0087 706 Pfam SET domain 520 642 IPR001214 GO:0005515
Glsi11g0087 706 SUPERFAMILY SET domain 370 665 IPR046341 -
Glsi11g0087 706 CDD SET_SETDB-like 384 642 - -
Glsi11g0087 706 ProSiteProfiles SET domain profile. 509 642 IPR001214 GO:0005515
Glsi11g0087 706 Pfam Pre-SET motif 363 510 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi11g0087 706 Gene3D - 1 60 IPR043017 -
Glsi11g0087 706 FunFam SET-domain containing protein lysine methyltransferase family protein 363 667 - -
Glsi11g0087 706 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 699 IPR025776 -
Glsi11g0087 706 Gene3D SET domain 363 667 IPR046341 -
Glsi11g0087 706 SMART set_7 509 648 IPR001214 GO:0005515
Glsi11g0087 706 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 -
Glsi11g0087 706 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 672 - -
Glsi11g0087 706 SMART preset_2 360 502 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0087 Glsi-ChrGlsi11 659000 664770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0087 359 665 Su(var)3-9 homologs AT5G04940 27.385 3.35e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi11g0087 Pre-SET 2.4e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0087 11 659000 664770 Glsi11g0087 11 659000 664770 CCT
Glsi11g0087 11 659000 664770 Glsi02g2987 02 78607914 78625224 CCT
Glsi11g0087 11 659000 664770 Glsi11g0087 11 659000 664770 ECH