Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0084 ATGCAGGCTGCTCCATCAAATTCCAACATCAGAAGTGTTGGGCACATGTTTTCATCTCCTGCTGAATGCCCCGATGAGATCCCTTTTTCCTCAGTTTCACGGCATGATAAGCAGTTTCAAAATTCTCCCTTCATTTCTCAGAAATTAAGTGACAACATTTCTTTCCCGTCAACACATTCTTCCCATTTAGAAATGCGTTCTACAACATTCATCTCTCATTCCCAGGAAAGTGATGATATTTCCTGGGAACCAGATCCATTTCAGAATATTATTAATTTTCCTGAAAATGCTCCTGTCCAGAATGATCAGGTGGAAAATAGTTCTTGTTACATATCTGAGGACAATGCTAAAAAATCTGATTTTGGGGAATGGGTTGATCAGTTAATGTCAGTTGATGATTCTCTGCACCCAAATTGGAGTCAGCTTCTCAGTGATGATGATGTAGCAGATTCAAAATCAAAGGAGACCCAGGTTTCCCACCAGCAGCATGTACCATCTGAAGAAGTTAATGCCCTTCCTAAATCAGTGTCAACTGCACCACAAACTAAGCCAAGAATGCGTTGGACTCCTGAACTTCATGAGGCCTTTGTAGAAGCAGTTAATCAACTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAACCTGATGAAAGTCGAGGGCCTTACCATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGTCATCAGAAGGAACTCCTCAGAAAAAGTTGACATCAATTGAAGAAATGAAATCTCTTGACTTGAAAACGAGTATGGGGATCACTGAAGCACTGCGGTTGCAAGTGGAATTACAGAAGCGACTTCATGAACAACTTGAGATTCAAAGAAAGTTGCAGATTCAAATTGAAAACCAAGGGAAGCACCTTCAGACGATGTTTGAGAAACGGAGAGAAATGGACGACAGTAAGCTCAAGGGCTCCTCCTCCTGCTTGGATGAGCCTTCTGCTCCAGTATCAAACAAGGTGTTACCTTTCTCCCCAGTTAACAATGAAATCACGAATGAGGGTCATGACAAATCTGGAATAAGCAGTAGCATTGGGAAAACCGTGCCTGAAGAAAGCTCCCAGGATGCAAGCACAAACCAAAAAGCAGATGACAATATCGATGATCAGTTTGATGCACCACCTACAAAAAGGGTGAAGAGTTGA 1197 0.4219 MQAAPSNSNIRSVGHMFSSPAECPDEIPFSSVSRHDKQFQNSPFISQKLSDNISFPSTHSSHLEMRSTTFISHSQESDDISWEPDPFQNIINFPENAPVQNDQVENSSCYISEDNAKKSDFGEWVDQLMSVDDSLHPNWSQLLSDDDVADSKSKETQVSHQQHVPSEEVNALPKSVSTAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGTPQKKLTSIEEMKSLDLKTSMGITEALRLQVELQKRLHEQLEIQRKLQIQIENQGKHLQTMFEKRREMDDSKLKGSSSCLDEPSAPVSNKVLPFSPVNNEITNEGHDKSGISSSIGKTVPEESSQDASTNQKADDNIDDQFDAPPTKRVKS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0084 398 FunFam Myb family transcription factor 182 240 - -
Glsi11g0084 398 MobiDBLite consensus disorder prediction 312 398 - -
Glsi11g0084 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 160 359 IPR044848 GO:0003700
Glsi11g0084 398 MobiDBLite consensus disorder prediction 379 398 - -
Glsi11g0084 398 Gene3D - 182 241 - -
Glsi11g0084 398 MobiDBLite consensus disorder prediction 338 378 - -
Glsi11g0084 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 240 IPR017930 -
Glsi11g0084 398 SUPERFAMILY Homeodomain-like 181 237 IPR009057 -
Glsi11g0084 398 MobiDBLite consensus disorder prediction 158 183 - -
Glsi11g0084 398 MobiDBLite consensus disorder prediction 146 183 - -
Glsi11g0084 398 Pfam MYB-CC type transfactor, LHEQLE motif 268 314 IPR025756 -
Glsi11g0084 398 NCBIfam myb-like DNA-binding domain, SHAQKYF class 183 237 IPR006447 GO:0003677
Glsi11g0084 398 Pfam Myb-like DNA-binding domain 185 236 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0084 Glsi-ChrGlsi11 648397 651620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0084 2 341 G2-like Transcription Factor Family AT3G04450 46.196 5.27e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi11g0084 Myb_DNA-binding 1.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0084 11 648397 651620 Glsi11g0772 11 4855212 4858599 CCT
Glsi11g0084 11 648397 651620 Glsi11g0084 11 648397 651620 ECH