Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0080 ATGAGGATTATGATAAAGGGTGGTGTTTGGAAGAACACCGAGGATGAAATTCTCAAAGCGGCCGTCATGAAGTATGGAAAAAACCAGTGGGCTCGAATCTCTTCGCTCCTGGTTCGCAAATCTGCTAAGCAATGCAAGGCTCGCTGGTACGAGTGGCTTGATCCTTCCATTAAGAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTCCTTCACCTTGCTAAGCTTATGCCCACACAATGGAGAACAATTGCTCCAATTGTAGGCCGTACCCCTTCTCAATGCCTTGAGCGGTATGAAAAACTCCTTGATGCAGCCTGTGTAAAGGATGAGAACTATGAACCTGGTGATGACCCCCGGAAATTGCGACCTGGGGAGATTGATCCGAACCCTGAGTCAAAACCTGCACGCCCAGATCCCGTTGATATGGATGAGGATGAGAAGGAAATGCTGTCTGAAGCGCGAGCTAGGTTAGCCAACACGAAGGGTAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAGCTAGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAAAAGAGAGAACTAAAGGCTGCTGGAATTGATATCAGGAAGCGGAGGAGGAAAAGGAAAGGAATAGACTATAATGCAGAAATCCCCTTTGAGAAAAGGCCTCCTCCAGGGTTTTTTGATGTCACTGATGAAGATAGACAAGTAGAACAGCCCAAGTTCCCAACCACTATTGAAGAACTTGAGGGAAAGAGAAGGGCTGACGTTGAAACACAGTTAAGAAAGCAAGACATTGCAAAGAATAAAATTGCACAAAGGCAAGATGCTCCATCTGCTATATTGACTGCCAACAAGCTCAATGACCCTGAAACAGTTAGAAAGAGATCGAAACTGATGCTCCCAGCACCCCAGATTTCTGACCATGAACTGGAAGAAATTGCAAAGATGGGTTATGCCAGTGACCTTGTGGGGAGTGAGGAACTTACAGAAGGTAGCGGTGCAACACATGCTCTTCTGGCTAACTATGCACAGACACCTAGCCAGGGAATGACTTCTTTACGAACTCCTCAGAGAACACCAGTTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGATTGAGAGAGTCCCAGACACCATTATTAGGAGGAGAGAACCCAGATTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAATCCTATGCTGACTCCCTCTGCAACCCCTGGAGCTGCAGGCTTCACTCCAAAAAGTGGTATGACACCTGCCATGGATGGTTTCTCTTTTGGCATGACTCCTAAGGGAACTCCTCTTAGAGATGAGCTTCATATCAATGAAGACATGGATATGCATGACAGCACAAAACTTGAGCTACGGAGACAAGCTGAACTCAAAAGAAGCTTGCGCTCAGGTTTAAGCAGTCTTCCATTGCCCAAAAATGAGTACCAGATAGTTATGCAACCAGTTCCAGAAGATGTTGATGAACCTGTGGAGAAGATTGAAGAGGATATGTCTGACAGAATAGCTAGGGAAAAGGCTGAAGAAGAAGCTCGGCAGCAGGCTTTACTTAGAAAACGATCAAAGGTCCTTCAAAGGGAGCTTCCTAGGCCTCCTGCCGCATCATTGGAACTGATAAGAAATTCTTTGATTAAAGCTGATGGGGACAAGAGTTCCTTTGTTCCACCTACTTCTATTGAGCAAGCTGATGAGATGATAAGAAAGGAGCTTCTAACCTTACTGGAACATGATAATGCTAAATACCCACTTGATGAGAAAGTGAATAAGGAGAGAAAAAAAGGAGTCAAACGTGCAGCAAATGGTTCTGCTGTTGTCTCTCTGATGGAAGATTTTGAGGAAGATGAGATGAAAGATGCTGATCAGTTGATAAAGGAGGAGGCTCAATCTCTTCGTGTAGCAATGGGGCATGAAAATGAACCCCTCCATGAATTTATTGAAGCGCATAGAACCTGCCTTAATGATCTTATGTACTTCCCTACCCGTAGTGCCTATGGTCTATCAAGTGTTGCTGGAAACATAGAGAAGCTTGCAGCTTCGCAGAATGAATTTGAGAATGTGAGAAACAAGTTGGATGATGGTAAAGAGAAGGTAGTAAGGCTTGAGAAGAAGGTGATAGTTCTCACGCAAGGCTATGAGACGAGGGCGAAAAAAAGTCTTTGGCCACAAATCGAGGCCACCTTCAAGCTGATGGACACTGCTGCAACAGAACTAGAGTGCTTCCAAGCTTTGCAAAGGCAGGAGCAGCTAGCAGCATCACACCGGATAAACAATCTATCTGCCGAAGTACAGAACCAAAAGGAACTTGAGAAAATCTTACAAAAGAGATATGGGGATCTTCTGGCAGAGCTGGAAAGGATTCAAAATATCAAGAACCAATACAGGGTACAAGCACAACAGCAAGAAGAAATTGCTGCAAAAAATCATTCTCTTGAGTTAGCTGAGACTGCATCTGATGGAACTAACTTACAGGGTATAGAGAATCATAAAGATGGACCCTGCTCAGATGAGGATGCAAGTGCTAAAATAGTCAATTCATCTCGTGATGAAACTGCTGACCAGCAAGTTGACGTTGTGCAAGACCTGGCCACGTCAAGCCCTAAAAATGATATGGATGTTGATACTGATAAAGAGCAAACAACACACGACACTGATGTTAAATTACAAGATGTTACACCTGCTGCAGAGAGGAACAGTGCTTCTGTGGTATCGGGTAGCGAGACCACTCTAGACACAGGTGCTGCAGAAGATATAAAAAATATGGAGGGATATGGGGAGGATCTAGAAGTGAAGAATCCAGATAATGTTGGTGAAGCCATAAACTCACACGATAACAAAATACAGGAGGAAACCGCTACTTTAAATTAG 2907 0.4438 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRKRRRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRQVEQPKFPTTIEELEGKRRADVETQLRKQDIAKNKIAQRQDAPSAILTANKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLVGSEELTEGSGATHALLANYAQTPSQGMTSLRTPQRTPVGKGDAIMMEAENLARLRESQTPLLGGENPDLHPSDFSGVTPKKKEIQTPNPMLTPSATPGAAGFTPKSGMTPAMDGFSFGMTPKGTPLRDELHINEDMDMHDSTKLELRRQAELKRSLRSGLSSLPLPKNEYQIVMQPVPEDVDEPVEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLIKADGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDEKVNKERKKGVKRAANGSAVVSLMEDFEEDEMKDADQLIKEEAQSLRVAMGHENEPLHEFIEAHRTCLNDLMYFPTRSAYGLSSVAGNIEKLAASQNEFENVRNKLDDGKEKVVRLEKKVIVLTQGYETRAKKSLWPQIEATFKLMDTAATELECFQALQRQEQLAASHRINNLSAEVQNQKELEKILQKRYGDLLAELERIQNIKNQYRVQAQQQEEIAAKNHSLELAETASDGTNLQGIENHKDGPCSDEDASAKIVNSSRDETADQQVDVVQDLATSSPKNDMDVDTDKEQTTHDTDVKLQDVTPAAERNSASVVSGSETTLDTGAAEDIKNMEGYGEDLEVKNPDNVGEAINSHDNKIQEETATLN 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0080 968 Coils Coil 769 789 - -
Glsi11g0080 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Glsi11g0080 968 FunFam CDC5 cell division cycle 5-like 60 120 - -
Glsi11g0080 968 Coils Coil 167 187 - -
Glsi11g0080 968 SMART sant 58 105 IPR001005 -
Glsi11g0080 968 SMART sant 6 55 IPR001005 -
Glsi11g0080 968 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Glsi11g0080 968 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Glsi11g0080 968 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Glsi11g0080 968 Gene3D - 5 59 - -
Glsi11g0080 968 Coils Coil 690 717 - -
Glsi11g0080 968 MobiDBLite consensus disorder prediction 113 150 - -
Glsi11g0080 968 CDD SANT_CDC5_II 55 106 IPR047240 -
Glsi11g0080 968 FunFam CDC5 cell division cycle 5-like 5 59 - -
Glsi11g0080 968 MobiDBLite consensus disorder prediction 951 968 - -
Glsi11g0080 968 Coils Coil 797 817 - -
Glsi11g0080 968 MobiDBLite consensus disorder prediction 833 852 - -
Glsi11g0080 968 MobiDBLite consensus disorder prediction 876 968 - -
Glsi11g0080 968 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Glsi11g0080 968 Gene3D - 60 114 - -
Glsi11g0080 968 MobiDBLite consensus disorder prediction 883 898 - -
Glsi11g0080 968 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 802 IPR047242 GO:0000398|GO:0000974
Glsi11g0080 968 Pfam Myb-like DNA-binding domain 10 70 - -
Glsi11g0080 968 CDD SANT 10 53 IPR001005 -
Glsi11g0080 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Glsi11g0080 968 MobiDBLite consensus disorder prediction 907 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0080 Glsi-ChrGlsi11 624894 630657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0080 1 831 MYB-Related Transcription Factor Family AT1G09770 75.750 0.0 1233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g0080 Myb_Cef 1.5e-60 No_clan