Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0076 ATGGGGACAGAACTTGTGAGCATATGTGTTAAAGAAGACAATGAAGAATTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCACTGATGAGGGTTGAAGACAATGAAAAACAGAATGATAAAAACACGAGCAATGCATCCTCCACGGTTGCTTCTGAATCACAGTCACAGGTGGAAACTGAGGCTCATGTTAGTGTTACTGCAAAGGCTTCTAGGTCCCTTCGACGAAGACCATGGATTAACTATGGACGTTATGATAACAGTTCAGAGGAAGACTCTGATTCTGAGCGGCTCAATCAAGTTAGTCTTATATTAGTTCATTTTGTTGGTTTTGAGAATTTCTCCTCAAGACCTTGTCTTCCTAGGGGAGTAATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCACGATGGCGACCGGAAGATGCTTGTAGGCCCAACCTTGAGGATGCTCCTGTCTTCTACCCAACAGAGGAGGTCTTGATTGGTTCTTGTGGCATACTTGAATTTGCATCTGAGTTTCAAGATACCTTGAAATATATAGCAAGCATTCGCTGCAGAGCTGAACCATATGGAATCTGTCGCATTGTTCCTCCTACTTCCTGGAAACCCCCCTGTTCTCTCAAGGAAAAAAGCATATGGGAGGGTTCTAAATTTGCAACTCGTGTCCAGAGGATTGACAAACTTCAGAATCGTGCTTCAATGAGAAAGATTTTAAGGATTCATAGTCATATGAAAAGGAAAAGGAGAAGATGGACAAGAATGGGGATTGATAGTGGAACTAGTACAGGACCTAATGCAGGATGTTGTGAGACTGAAAGTTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGGGATATGCAGATGATTTTAAGGCTAGATACTTCAGAAAGAATGAGCATGTGCACCATTTTGGAGGCAATACAACAATGTTAGAAGGCACCTTGGAGCCTTCAGTGGAAAACATTGAGGGCGAATATTGGAGAATGATAGAGAGACCTACTGAAGAAATTGAGGTGCTCTATGGAGCTGATCTGGAAACTGGAATATTTGGGAGTGGTTTTCCTAGAAAGTTTAGTCAAGTTGGCTCTGCTCCACATGAACTGTACATAAAATCTGGATGGAATTTAAATAACTTTGCTAGGCTTCCTGGATCTGTACTCTCATATGAAAGCAGTGACATATCTGGTGTTCTACACGTTGAAGATCACCATTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATATGGTATGGCGTCCCTGGAAAAGATGCTTGCAAATTGGAAGAGTCCATGAGAAAGCATTTACCAGATCTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACCCAGCTTTCTCCTTCCATCCTAAAGTTTGAAGGAGTACCTGTCTATAGGTGTGTCCAGAACCCTGGAGAATTTGTTCTGACATTCCCGCGAGCCTATCATTCTGGGTTCAACTGTGGCTTCAACTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGATTGGCTGCCCCATGGGCAGACTGCCATTGAGCTATACCAGGCACAGGGGCGCAGGACTTCTATATCCCATGATAAGCTGTTGCTTGGGGCTGCTAGGGAAGCAGTAAAAGCGCAGTGGGAGCTTAATTTGCTAAAGAAGAATACTTCAGATAATCTAAGATGGAAAGAAGTCTGTGGAAAGGATGGCCTTCTGGTAAAAGCACTCAAGACACGAGTTGAGATGGAACAAGTAAGGAGGGAGTTTCTCTGCAGTTATTCACAGGCATTAAAAATGGAGAGCAGCTTTGATGCCACTAGTGAAAGGGAATGCAATGTTTGCCTTTTTGATTTACACCTATCTGCAGTTGGTTGCCGATGTTCCCCAGATCGATATGCTTGCTTGGATCATGCCAAGCAGTTCTGTTCCTGTGATTGGGATTCCAAGTTCTTCCTCTATCGTTATGATATTAGTGAGTTAAATATTCTCGTTGAGGCATTGGAAGGAAAATTAAGTGCAGCGTACAGATGGGCAAAATTAGATCTTGGGCTTGCACTAACTTCTTATGTCTCAGAAGAGAAGGAAAAAATACTTAAGGAATTGAGATTGTATTCTTCAGCCATTTCTCTTGAAGATTCTACTCTGATAGATGTTCCCATAGAGAATCTTGCAAATTCAGAAAAAAGAATTGATCAGAGATATTTAAGACAGAGAAAACCAGAAGAGGCTGAATCTCCTTTGAGTCATATGAAGGAACTGTTAACATCTAATTGCTCAACTCCAGGATGTGAGATGCCTAATCAAAAGACCTATTCCAAGAAAGAAGAATCTGTTACAAACATGAAAACCCCTGTTGATCAGTTGTCTCTTGAGGGTAGATCATATGCTTTATCACCGGCTCTAGCTGAACATGGAGCTAATAAAACTTCACTTTATGGACATGACAATATTATACTTCTTAGTGATGATGAAGGTGATGATGAGCCAAAGAATTCAGATAGAGGGAAGGAATTTTCTCAGAGGCTCACAGTTTCTAGTGATAAAGCCAGCCCATGTAATAATATAGATGATCCGGACTTGACCATCCCCATGACAGATGCTGCTGTGATGGGTGAAAAGGATGCTATTACATTGCTCCATGAAAATAAGAGTTCTCATTTAATTAATCTTTTGCCTGTGAAACAGGAACATCATAGGGGAACAGTTATAGGTTCAACCCAAGATCTTTCTTGCCATATTGGTTTTCCTAGTGCGGGATTAGTTGAAAATATTCAGGCTTCTACTTCAGGACAGACCAGGGATCATTGTCCTCAGAATCCACAGCATTATGGCACTGTGAAGCCTAAGAATGAGGACAACAATGAAAAGTTTGCAGGATGTGCCACTTCTAACATAGCAGACAATGTAAGAGCTGTTAATCGAAACATGTCTTGCAGTCCAAACAATTTGGAAAGTTATTACCGTCCAAGAGGTCCTCGTATTGCTAAGGTTGTCAGGCGTATCAACTGCAATGTTGAACATCTAGAATTTGGAGTTGTGCTTTCTGGAAAGTCATGGTGCAACAGTCGGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAGTGTCCTAGATCCATCCAGTATGTGTTATTATGTTTCAGAAATTCTTGATGCTGGACGTGATGGGCCCCTATTTATGGTGTCCTTGGAACATTGTCCAAATGAGGTCTTCATTCATATATCAGCTGCGAGATGCTGGGAACTGGTAAGAGAGAGAGTGAATCAAGAAATCACAAAACAACATAAGCTGGGAAGAAAGAACCTTCCTCCTTTGCAGCCTCCTGGAAGCCTTGATGGATTTGAAATGTTCGGTTTTTCTTCACCAGCAATAGTGCAGGCTGTTGAGGCACTGGATCGAAGCCGAGTTTGTAAGGAATATTGGGATTCCCGGCCGTATTCCCGGCCTCAAGGGCAGATTTCTCAAGCCTCTCAATCCAATGAAAATGGTGGAAACTTGCATGGGCTATTGGAGGAGAGAAATGGTCAAGGAATCCTGAAGAATCAACTCTTGCCTATTGGACCTGATGCAGTACTAAGGAGTCTGTTTAAAAAGGCCAATGCAGAAGAATTGAACTCATTGTACAGCATTCTAAGTGACACTAGGCCATCGACTGATCGGAGCTTAATTGCGCAAATGCTTAATGAGGAGATTCTCCACCGTCCAAGATAA 3747 0.4193 MGTELVSICVKEDNEEFPSVPPGFESYTSFSLMRVEDNEKQNDKNTSNASSTVASESQSQVETEAHVSVTAKASRSLRRRPWINYGRYDNSSEEDSDSERLNQVSLILVHFVGFENFSSRPCLPRGVIRGCPDCSNCQKVVARWRPEDACRPNLEDAPVFYPTEEVLIGSCGILEFASEFQDTLKYIASIRCRAEPYGICRIVPPTSWKPPCSLKEKSIWEGSKFATRVQRIDKLQNRASMRKILRIHSHMKRKRRRWTRMGIDSGTSTGPNAGCCETESFGFEPGPEFTLETFQGYADDFKARYFRKNEHVHHFGGNTTMLEGTLEPSVENIEGEYWRMIERPTEEIEVLYGADLETGIFGSGFPRKFSQVGSAPHELYIKSGWNLNNFARLPGSVLSYESSDISGVLHVEDHHLYSLNYMHWGAPKIWYGVPGKDACKLEESMRKHLPDLFEEQPDLLHKLVTQLSPSILKFEGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQTAIELYQAQGRRTSISHDKLLLGAAREAVKAQWELNLLKKNTSDNLRWKEVCGKDGLLVKALKTRVEMEQVRREFLCSYSQALKMESSFDATSERECNVCLFDLHLSAVGCRCSPDRYACLDHAKQFCSCDWDSKFFLYRYDISELNILVEALEGKLSAAYRWAKLDLGLALTSYVSEEKEKILKELRLYSSAISLEDSTLIDVPIENLANSEKRIDQRYLRQRKPEEAESPLSHMKELLTSNCSTPGCEMPNQKTYSKKEESVTNMKTPVDQLSLEGRSYALSPALAEHGANKTSLYGHDNIILLSDDEGDDEPKNSDRGKEFSQRLTVSSDKASPCNNIDDPDLTIPMTDAAVMGEKDAITLLHENKSSHLINLLPVKQEHHRGTVIGSTQDLSCHIGFPSAGLVENIQASTSGQTRDHCPQNPQHYGTVKPKNEDNNEKFAGCATSNIADNVRAVNRNMSCSPNNLESYYRPRGPRIAKVVRRINCNVEHLEFGVVLSGKSWCNSRAIFPKGFRSRVRYISVLDPSSMCYYVSEILDAGRDGPLFMVSLEHCPNEVFIHISAARCWELVRERVNQEITKQHKLGRKNLPPLQPPGSLDGFEMFGFSSPAIVQAVEALDRSRVCKEYWDSRPYSRPQGQISQASQSNENGGNLHGLLEERNGQGILKNQLLPIGPDAVLRSLFKKANAEELNSLYSILSDTRPSTDRSLIAQMLNEEILHRPR 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0076 1248 PANTHER LYSINE-SPECIFIC DEMETHYLASE 149 1154 - -
Glsi11g0076 1248 SMART fyrc_3 1070 1164 IPR003889 GO:0005634
Glsi11g0076 1248 Gene3D - 1012 1150 - -
Glsi11g0076 1248 MobiDBLite consensus disorder prediction 1159 1177 - -
Glsi11g0076 1248 MobiDBLite consensus disorder prediction 765 788 - -
Glsi11g0076 1248 SMART JmjN_1 156 210 IPR003349 -
Glsi11g0076 1248 ProSiteProfiles FYR domain FYRC motif profile. 1066 1156 IPR003889 GO:0005634
Glsi11g0076 1248 ProSiteProfiles JmjC domain profile. 361 530 IPR003347 -
Glsi11g0076 1248 Pfam JmjC domain, hydroxylase 409 513 IPR003347 -
Glsi11g0076 1248 Pfam jmjN domain 178 204 IPR003349 -
Glsi11g0076 1248 Pfam F/Y-rich N-terminus 1019 1061 IPR003888 GO:0005634
Glsi11g0076 1248 MobiDBLite consensus disorder prediction 831 850 - -
Glsi11g0076 1248 MobiDBLite consensus disorder prediction 44 70 - -
Glsi11g0076 1248 SMART cupin_9 382 530 IPR003347 -
Glsi11g0076 1248 SMART fyrn_3 1020 1064 IPR003888 GO:0005634
Glsi11g0076 1248 MobiDBLite consensus disorder prediction 1157 1177 - -
Glsi11g0076 1248 Pfam C5HC2 zinc finger 620 670 IPR004198 -
Glsi11g0076 1248 MobiDBLite consensus disorder prediction 31 70 - -
Glsi11g0076 1248 SUPERFAMILY Clavaminate synthase-like 368 557 - -
Glsi11g0076 1248 ProSiteProfiles JmjN domain profile. 170 211 IPR003349 -
Glsi11g0076 1248 Gene3D Cupin 142 514 - -
Glsi11g0076 1248 Pfam F/Y rich C-terminus 1068 1152 IPR003889 GO:0005634
Glsi11g0076 1248 ProSiteProfiles FYR domain FYRN motif profile. 1006 1064 IPR003888 GO:0005634
Glsi11g0076 1248 MobiDBLite consensus disorder prediction 831 867 - -
Glsi11g0076 1248 FunFam Putative lysine-specific demethylase JMJ16 1012 1150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0076 Glsi-ChrGlsi11 602019 609910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0076 1 1246 JUMONJI Transcription Factor Family AT1G08620 52.218 0.0 1176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi11g0076 JmjC 2.1e-37 CL0029