Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0075 ATGGCGACTCCATCGTCCTCAGCTCCTTCATCCATCGTGTCTTCGCAATTCACCTACGCCAGCGGCTCATACTTCCCTTTGCCTTTTCACCTTCAGCAATCCCCTTCGGCGGTGTACGCTGCACCATATGCGGCGGCTTCCGCGGCAGCGCCGGTAATGCAAATTCCTCCGCCTTCTGTTTACCCCCCTCCGGCTCCGGTAGCTGGTGTGTATTCTCTGCCGCAGTATCAGCAGGCGCAGCAGTTATTTCAAAGGGATGCACAGACAATTACACCTGAGGCTATTGAGAGTGTTAAGGCAGCCATTGCTAACAGTGAGATTGAGCACAAGGCGGAGACCAAAAGGAAAGCAGTGCCTCGCAAAGCTGCAGGCCAAACGTGGGAGGATCCCATTCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTTTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGGTTTCCTTCCTTTAATATGGCACGAGTTGTCAGAGATAAGAGGACCGGAAAAACAAAGGGTTATGGATTTGTAAGCTTTGCCAATCCCTCTGACCTTGCCGCTGCTTTTAAAGAAATGAATGGTAAATACGTTGGAAATCGACCAATTAAACTACGCAAAAGTAAGTGGAAGGAGAGGACAGATTATGAGGCCCTGGAAAAACAGAAGAACCAAACTCACAAGAAATCAAAATTGCCCCGGAAGGGTGTCCTGCACAAGTGA 747 0.4886 MATPSSSAPSSIVSSQFTYASGSYFPLPFHLQQSPSAVYAAPYAAASAAAPVMQIPPPSVYPPPAPVAGVYSLPQYQQAQQLFQRDAQTITPEAIESVKAAIANSEIEHKAETKRKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAAFKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQTHKKSKLPRKGVLHK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0075 248 MobiDBLite consensus disorder prediction 225 248 - -
Glsi11g0075 248 SUPERFAMILY RNA-binding domain, RBD 123 220 IPR035979 GO:0003676
Glsi11g0075 248 CDD RRM_RBM42 134 216 IPR034215 -
Glsi11g0075 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Glsi11g0075 248 FunFam RNA-binding protein 42 75 225 - -
Glsi11g0075 248 SMART rrm1_1 141 214 IPR000504 GO:0003723
Glsi11g0075 248 Gene3D - 84 232 IPR012677 -
Glsi11g0075 248 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 66 231 - -
Glsi11g0075 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0075 Glsi-ChrGlsi11 593904 597879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0075 142 242 Eukaryotic Initiation Factors Gene Family AT1G71770 26.733 2.63e-07 49.3