Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0064 ATGGGAAGAGCATTGGCTTCTCTGTTGTTGGCTTCTTATATCTTCGTCTCTGTTTCTGCTATCGATGGTGAATACGCACAGTGCAATTGTGATGAGGAAGGGCTTTGGAGCATACATAGCATTCTAGAGTGCCAAAAAGTCAGTGACTTTTTTATTGCCATAGCATATTTTTCGATCCCTCTTGAGCTGCTTTTCTTCGTTAGCCGCTCCAACTTTCCCTTCAAATGGGTCTTCCTTCAATTCATTGCTTTCATAGTCCTCTGTGGCTTGACGCATTTACTTAATGCATATACTTATTACGGGCCTCACTCCTTCCAGTTGGTGCTCTTTCTTACTATTTCTAAATTCCTTACTGCTCTTGTCTCATGTGCAACCGCAATTACCCTTTTTACTCTAATTCCCCTTCTTCTTAAAATCAAAGGGAGGGAGCTTTTCTTGAAGCAGAACGTCTTGGAATTAGACCAAGAAATTGGAATGATGAAAAAACAGAAGGAAGCAAGCTGGCATGTTCGGATGCTCACACGAGAAATTAGGAAGTCGTTGGATAAGCATACTATCTTGTACACCACCCTTGTTGAGCTTTCTAAGTCCTTAGACTTGCATAACTGCGCAGTTTGGATGCCAAATGAGGACAGACGAGAAATGTACCTAACCCATGAGCTGAAACCAAGCTCTGGTGAGAATTTTCACAATTCTATTCCCATAAACGACTCGGATGTATTAGAGATAAGAAAAAGTAAGGGGGTGAGGATTTTGAGACCTGAATCAGCACTAGGAGCTGCAAGTAAGGGGGGATCTGGGGAGTCGGGTGCTGTTGCAGCTATTCGCATGCCAATGCTTCACGTTTCAAATTTTAAAGGTGGGACACCAGAGCTGGTTGAGACATCGTATGCTATTCTGGTTTTGGTTCTTCCAAATTCAAACTCGAGGGTTTGGATACACCATGAGATGGAGATTGTGGAAGTAGTTGCTGACCAGGTGGCTGTAGCCCTGTCTCATGCATCTGTTCTTGAAGAGTCTCAACTAATGAGACAGAAATTGGCAGAGCAAAACCGAGCTTTGCAACAGGCTAGAAAGAATGCAATGATGGCTAGCCAGGCCAGGACATCATTTCAGAAAGTGATGAATCATGGAATGCGCAGGCCTATGCATTCAGTCCTGGGCCTGCTTTCAATGTTTCAAGAGGACAATATGAGATCTGAACAGAAGATTATAGTTGACACAATGGTGAAAGTTAGCCATGTTCTCTCAAGTTTGATTGATGATGTAATGGATGTTTCAGCAAATGACAAAGGAAGCTTCCACCTGGAGATGAAAGCTTTCCATTTACATTCAATGATGAGGGAAGCTGCTTGCATTGCTAAATGTCTGTGTGTATATAAAGGCTTTCTTTTTGAAATTGAAGTCCAGAAGTCTTTGCCTGATCTGGTGATGGGCGATGAAGCAAGGACCTTTCAAGTAATTTTGCATATGATTGGCTATCTGTTGAACATTTATGATGGAGGAGGGACTCTCATTTTTCGAGTTTTTCTTGACAGTGATGCCAGTGATAAGGATGATAAATTTTTGGCAATATGGAGATCAAGCATGCAAAATGATTATGTATATATAAAATTTGACTTTCAGATAACTGGTGTAAGTTCTCAGTCAGATGAATCAACTTCAACAAGACATTATGCTGGTAGGAGGCAGTACAACAATGAACCTAAGGAGGGCCTAAGCTTCAGCCTGTGCAAAACACTGGTGCAGATGATGCAAGGTAATATCTGGATATCACCAAACTTTCTTGGTTTGGCACAAAGTATGACACTTGTTCTCAAGTTTCAGATAGGGCCATCACTTAGAAGATCCATTTTGGCACCTAAAGATTCTTCAGACTCGCAGTTTAGAGGCCTCAAGGTTGTGTTAACCGATGATGATGATGTGAACAGGACAGTGACGAAGAAACTTCTTGAGAAGCTGGGTTGTCAAGTAACAGCTGTTTCGTCAGGGTTTGAATGCCTGGGTGTTATAAACGCCTCCGGTAACTCATTCAAAATTATCCTTCTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTAGCAATGAGAGTTCGGAAGTTTCACAGCCGTAACTGGCCGTTAATTATAGCTCTTACAGCAAGTGCAGAAGAACATGTGAAGGAGAGATGCCTACAGTTGGGAATGAATGGATTGATTCGAAAACCTATTCTCCTTCATGAGATAGGAGATGAACTTAGAAGAGTGCTGCAACGTGCAGAAGGGAAATCACAACGCTTAAGGACGGAGTTGTTGGTACTTGGTGGTACAGGCGAGAGAATCCGGTGTGTTATGCTTATTAGCTTCGTCTGA 2355 0.4221 MGRALASLLLASYIFVSVSAIDGEYAQCNCDEEGLWSIHSILECQKVSDFFIAIAYFSIPLELLFFVSRSNFPFKWVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLVLFLTISKFLTALVSCATAITLFTLIPLLLKIKGRELFLKQNVLELDQEIGMMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKSLDLHNCAVWMPNEDRREMYLTHELKPSSGENFHNSIPINDSDVLEIRKSKGVRILRPESALGAASKGGSGESGAVAAIRMPMLHVSNFKGGTPELVETSYAILVLVLPNSNSRVWIHHEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQARKNAMMASQARTSFQKVMNHGMRRPMHSVLGLLSMFQEDNMRSEQKIIVDTMVKVSHVLSSLIDDVMDVSANDKGSFHLEMKAFHLHSMMREAACIAKCLCVYKGFLFEIEVQKSLPDLVMGDEARTFQVILHMIGYLLNIYDGGGTLIFRVFLDSDASDKDDKFLAIWRSSMQNDYVYIKFDFQITGVSSQSDESTSTRHYAGRRQYNNEPKEGLSFSLCKTLVQMMQGNIWISPNFLGLAQSMTLVLKFQIGPSLRRSILAPKDSSDSQFRGLKVVLTDDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGVINASGNSFKIILLDLHMPEMDGFEVAMRVRKFHSRNWPLIIALTASAEEHVKERCLQLGMNGLIRKPILLHEIGDELRRVLQRAEGKSQRLRTELLVLGGTGERIRCVMLISFV 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0064 784 Gene3D - 333 430 - -
Glsi11g0064 784 SUPERFAMILY GAF domain-like 185 334 - -
Glsi11g0064 784 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 421 594 IPR036890 -
Glsi11g0064 784 CDD HATPase_ETR2_ERS2-EIN4-like 473 606 - -
Glsi11g0064 784 ProSiteProfiles Response regulatory domain profile. 633 751 IPR001789 GO:0000160
Glsi11g0064 784 SUPERFAMILY CheY-like 628 753 IPR011006 -
Glsi11g0064 784 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 432 IPR036097 GO:0000155|GO:0007165
Glsi11g0064 784 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 756 - -
Glsi11g0064 784 ProSiteProfiles Histidine kinase domain profile. 374 608 IPR005467 -
Glsi11g0064 784 FunFam Ethylene receptor 4 334 428 - -
Glsi11g0064 784 Gene3D - 632 779 - -
Glsi11g0064 784 FunFam Ethylene receptor 630 754 - -
Glsi11g0064 784 SMART gaf_1 182 341 IPR003018 GO:0005515
Glsi11g0064 784 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Glsi11g0064 784 Pfam Response regulator receiver domain 634 743 IPR001789 GO:0000160
Glsi11g0064 784 Gene3D - 160 332 IPR029016 -
Glsi11g0064 784 SMART REC_2 632 747 IPR001789 GO:0000160
Glsi11g0064 784 Coils Coil 744 764 - -
Glsi11g0064 784 Pfam GAF domain 184 331 IPR003018 GO:0005515
Glsi11g0064 784 Gene3D - 431 610 IPR036890 -
Glsi11g0064 784 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Glsi11g0064 784 Coils Coil 337 367 - -
Glsi11g0064 784 CDD REC_ETR-like 632 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0064 Glsi-ChrGlsi11 498636 505274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0064 22 754 Miscellaneous Gene Families AT3G04580 64.295 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi11g0064 GAF 6.3e-10 CL0161