Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0058 ATGGATGGATGGAATCGGGTCATAATATTATCACCTATCGGATTCAGCGATGCCCGCAGCATATCGGATCGCGCTTCAGAGTTCAGATCCGATGGATGCATCGGATCAGCAGTAGTGAGCAAGAGGTGTCAGAAGATGTTGAAATTGTCTCGCATGTTGCCTTCCAGGAATCAGTTAATGGAAACAATGTCATCACATAAAGCTGATCTTAGAGACAGTCTATGGCATCTGCATGGTTCTACCCATTCAGTTGGCATTTCTACTGCGACAAATAGTTATTCTGCTAAAGTGTATACTTCAAATCGAATATTTGCTCCTTATTCTGTTTACAAAGGCAAAGCTGCACTCTCTTTGAGTCCTTGTCTACCAACTTTCACTAAGTTGAATTCCGGGGCAGTTGTAGTTGATCGCCGTGGTACAATGATGATGATTTTCAGACCTGCTATTGGTGAGCGCAAATATGATTGGGAGAAGAGACAGAGATTCGCTCTATCAGCAACGGAGGTTGGTTCTTTGATAAGCATGGGCCCCACAGATTCCTGTGAATTCTTTCATGACCCCTCAATGTCATCAAGTAATGCTGGTCAAGTCAGGAAGAGCTTATCAATTAAGCCTAATGCGGAAGGCACTGGCTACTTCATGTCTTTGGCTGTTGTCAACAACATTTTAAAGACCAAAGAATACTTAACAGTTCCTGTCACAACTGCTGAGTTTGCTGTGATGAAGACTGCTTGTAATTTTGCATTGCCACACATTATGGGTTGGGATCGTCTGACTCATCAACATTCCAGAGGTATGACTGGTCATGAATCAAAGTTGGACCCACAAGTTTTAGACTTGGAGTGGGAAAAGTAA 855 0.4292 MDGWNRVIILSPIGFSDARSISDRASEFRSDGCIGSAVVSKRCQKMLKLSRMLPSRNQLMETMSSHKADLRDSLWHLHGSTHSVGISTATNSYSAKVYTSNRIFAPYSVYKGKAALSLSPCLPTFTKLNSGAVVVDRRGTMMMIFRPAIGERKYDWEKRQRFALSATEVGSLISMGPTDSCEFFHDPSMSSSNAGQVRKSLSIKPNAEGTGYFMSLAVVNNILKTKEYLTVPVTTAEFAVMKTACNFALPHIMGWDRLTHQHSRGMTGHESKLDPQVLDLEWEK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0058 284 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 56 284 IPR013742 GO:0003697|GO:0006355|GO:0006952
Glsi11g0058 284 Pfam Whirly transcription factor 109 243 IPR013742 GO:0003697|GO:0006355|GO:0006952
Glsi11g0058 284 SUPERFAMILY ssDNA-binding transcriptional regulator domain 100 264 IPR009044 GO:0003677|GO:0006355
Glsi11g0058 284 Gene3D Transcriptional Coactivator Pc4; Chain A 94 266 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0058 Glsi-ChrGlsi11 462215 466191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0058 100 284 Whirly Transcription Factor Family AT1G71260 67.196 8.43e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Glsi11g0058 Whirly 1.5e-55 CL0609